Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g704.t1 | METHYL-CPG BINDING PROTEIN, MBD | 1 | positive |
| g15643.t1 | TUBULIN | 0.99 | positive |
| g9780.t1 | -- | 0.98 | positive |
| g7841.t1 | YEAST SPT2-RELATED | 0.98 | positive |
| g13385.t1 | SERINE/THREONINE-PROTEIN KINASE RIO1 | 0.98 | positive |
| g2094.t1 | -- | 0.97 | positive |
| g10745.t1 | MACPF DOMAIN-CONTAINING PROTEIN | 0.97 | positive |
| g12395.t1 | LYSOSOMAL ACID LIPASE-RELATED | 0.97 | positive |
| g1944.t1 | -- | 0.97 | positive |
| g6270.t1 | BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER | 0.97 | positive |
| g17432.t1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 150 | 0.96 | positive |
| g6450.t1 | DUAL SPECIFICITY PROTEIN PHOSPHATASE | 0.96 | positive |
| g3285.t1 | PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN | 0.96 | positive |
| g1971.t1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 51 | 0.96 | positive |
| g8857.t1 | AGAP004327-PA | 0.96 | positive |
| g27052.t1 | THO2 PROTEIN | 0.96 | positive |
| g5566.t1 | LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 | 0.95 | positive |
| g19249.t1 | CXXC-TYPE ZINC FINGER PROTEIN 1 | 0.95 | positive |
| g7487.t1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 | 0.95 | positive |
| g10627.t1 | RAD9, HUS1, RAD1-INTERACTING NUCLEAR ORPHAN PROTEIN 1 | 0.95 | positive |
| g14629.t1 | M-AAA PROTEASE-INTERACTING PROTEIN 1, MITOCHONDRIAL | 0.95 | positive |
| g23802.t1 | -- | 0.95 | positive |
| g13755.t1 | -- | 0.94 | positive |
| g28014.t1 | SERINE-THREONINE PROTEIN KINASE | 0.94 | positive |
| g2277.t1 | 3-DEHYDROQUINATE SYNTHASE | 0.94 | positive |
| g33532.t1 | WILMS' TUMOR 1-ASSOCIATING PROTEIN | 0.94 | positive |
| g8169.t1 | TROPONIN | 0.94 | positive |
| g17022.t1 | MITOCHONDRIAL 39S RIBOSOMAL PROTEIN L49 | 0.94 | positive |
| g2558.t1 | -- | 0.94 | positive |
| g13746.t1 | CALMODULIN-LYSINE N-METHYLTRANSFERASE | 0.93 | positive |
| g13401.t1 | P53 REGULATED PA26 NUCLEAR PROTEIN SESTRIN | 0.93 | positive |
| g18189.t1 | SULFATASE MODIFYING FACTOR 1, 2 | 0.93 | positive |
| g29441.t1 | -- | 0.93 | positive |
| g27143.t1 | PROGRAMMED CELL DEATH PROTEIN 7 | 0.93 | positive |
| g34177.t1 | -- | 0.92 | positive |
| g28095.t1 | ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 2 PROTEIN FON -RELATED | 0.92 | positive |
| g14311.t1 | TGF-BETA INDUCED APOPTOSIS PROTEIN | 0.91 | positive |
| g13268.t1 | N-ALPHA-ACETYLTRANSFERASE | 0.90 | positive |
| g2142.t1 | SYNTAXIN | 0.89 | positive |
| g7939.t1 | MYOCARDIN-RELATED TRANSCRIPTION FACTOR-RELATED | 0.88 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 276 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
