Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g7072.t1 | -- | 1 | positive |
| g2591.t1 | EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN | 0.99 | positive |
| g17231.t1 | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD | 0.98 | positive |
| g20613.t1 | CONSTITUTIVE COACTIVATOR OF PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA | 0.98 | positive |
| g14177.t1 | -- | 0.97 | positive |
| g13247.t1 | RE74312P | 0.97 | positive |
| g9494.t1 | -- | 0.97 | positive |
| g14856.t1 | -- | 0.97 | positive |
| g19681.t1 | -- | 0.97 | positive |
| g14232.t1 | CELL DEATH ACTIVATOR CIDE | 0.96 | positive |
| g7948.t1 | ZINC FINGER PROTEIN 207 | 0.96 | positive |
| g20091.t1 | UPF0449 PROTEIN C19ORF25 | 0.96 | positive |
| g10727.t1 | DNA-DIRECTED RNA POLYMERASE II | 0.96 | positive |
| g15046.t1 | GLYCOGEN SYNTHASE KINASE-3 ALPHA | 0.96 | positive |
| g35492.t1 | 4.1 G PROTEIN | 0.96 | positive |
| g16544.t1 | RNA BINDING PROTEIN PUMILIO-RELATED | 0.96 | positive |
| g14178.t1 | APOPTOTIC CHROMATIN CONDENSATION INDUCER IN THE NUCLEUS | 0.96 | positive |
| g7839.t1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA | 0.96 | positive |
| g20897.t1 | EF-HAND DOMAIN-CONTAINING PROTEIN D | 0.95 | positive |
| g27525.t1 | -- | 0.95 | positive |
| g2699.t1 | MRG-BINDING PROTEIN | 0.95 | positive |
| g12825.t1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U FAMILY MEMBER | 0.95 | positive |
| g17617.t1 | ANKYRIN REPEAT PROTEIN | 0.95 | positive |
| g784.t1 | -- | 0.95 | positive |
| g4818.t1 | POU DOMAIN | 0.95 | positive |
| g27038.t1 | MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 | 0.94 | positive |
| g2031.t1 | -- | 0.94 | positive |
| g17318.t1 | -- | 0.94 | positive |
| g14997.t1 | -- | 0.94 | positive |
| g36412.t1 | NEUROCHONDRIN | 0.94 | positive |
| g35155.t1 | CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR | 0.94 | positive |
| g16545.t1 | -- | 0.93 | positive |
| g11551.t1 | TUBULIN | 0.93 | positive |
| g10894.t1 | -- | 0.93 | positive |
| g26943.t1 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY | 0.92 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 213 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
