Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g7257.t1 | RING FINGER PROTEIN 127 | 1 | positive |
| g11552.t1 | METHYL-CPG BINDING PROTEIN, DROSOPHILA | 0.96 | positive |
| g11629.t1 | KNIRPS-RELATED PROTEIN-RELATED | 0.96 | positive |
| g29834.t1 | HAMARTIN | 0.96 | positive |
| g21368.t1 | FACIOGENITAL DYSPLASIA PROTEIN | 0.95 | positive |
| g9548.t1 | TUBBY-RELATED | 0.95 | positive |
| g10462.t1 | NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED | 0.95 | positive |
| g12759.t1 | SLINGSHOT PROTEIN PHOSPHATASE HOMOLOG | 0.95 | positive |
| g11437.t1 | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 | 0.95 | positive |
| g20916.t1 | GTP-BINDING PROTEIN ALPHA SUBUNIT | 0.95 | positive |
| g16960.t1 | -- | 0.95 | positive |
| g6288.t1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR | 0.95 | positive |
| g11711.t1 | BATTENIN | 0.95 | positive |
| g34775.t1 | JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN | 0.94 | positive |
| g11677.t1 | DOUBLECORTIN DOMAIN-CONTAINING PROTEIN 1 | 0.94 | positive |
| g12364.t1 | FANCONI ANEMIA CORE COMPLEX-ASSOCIATED PROTEIN 100 | 0.94 | positive |
| g27712.t1 | SH3-BINDING | 0.94 | positive |
| g335.t1 | VACUOLAR PROTEIN SORTING 54 | 0.94 | positive |
| g18946.t1 | -- | 0.94 | positive |
| g4202.t1 | ANAPHASE-PROMOTING COMPLEX SUBUNIT 2 | 0.94 | positive |
| g16961.t1 | ABC TRANSPORTER G FAMILY MEMBER 28 | 0.94 | positive |
| g3264.t1 | ACTIN-BINDING LIM PROTEIN | 0.94 | positive |
| g22614.t1 | -- | 0.94 | positive |
| g34387.t1 | -- | 0.94 | positive |
| g334.t1 | VACUOLAR PROTEIN SORTING 54 | 0.93 | positive |
| g35074.t1 | DOCKING PROTEIN RELATED | 0.93 | positive |
| g1857.t1 | ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL | 0.89 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 116 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
