Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g7287.t1 | -- | 1 | positive |
| g11089.t1 | OS06G0237300 PROTEIN | 0.96 | positive |
| g3658.t1 | SNF2/RAD54 FAMILY MEMBER | 0.95 | positive |
| g35378.t1 | -- | 0.95 | positive |
| g9039.t1 | ZINC FINGER SWIM DOMAIN CONTAINING PROTEIN 4, 5, 6 | 0.95 | positive |
| g10190.t1 | EH DOMAIN | 0.94 | positive |
| g5251.t1 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED | 0.93 | positive |
| g17942.t1 | SWI/SNF-RELATED | 0.93 | positive |
| g9166.t1 | REGULATOR OF G-PROTEIN SIGNALING LOCO | 0.93 | positive |
| g10463.t1 | NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED | 0.93 | positive |
| g11437.t1 | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 | 0.93 | positive |
| g883.t1 | EH DOMAIN | 0.93 | positive |
| g6573.t1 | -- | 0.93 | positive |
| g33429.t1 | NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED | 0.93 | positive |
| g12318.t1 | CLASP | 0.92 | positive |
| g31506.t1 | CENTROSOMAL PROTEIN OF 162 KDA | 0.92 | positive |
| g568.t1 | -- | 0.92 | positive |
| g4562.t1 | NH 3 /GLUTAMINE-DEPENDENT NAD + SYNTHETASE | 0.91 | positive |
| g19126.t1 | -- | 0.91 | positive |
| g969.t1 | CENTROSOMAL PROTEIN OF 290 KDA | 0.91 | positive |
| g11408.t1 | -- | 0.91 | positive |
| g24371.t1 | -- | 0.91 | positive |
| g9055.t1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE | 0.91 | positive |
| g27405.t1 | -- | 0.91 | positive |
| g4067.t1 | CADHERIN-87A | 0.91 | positive |
| g23371.t1 | -- | 0.91 | positive |
| g5343.t1 | -- | 0.90 | positive |
| g34768.t1 | UNCHARACTERIZED | 0.90 | positive |
| g10317.t1 | PDZ DOMAIN-CONTAINING PROTEIN | 0.90 | positive |
| g11283.t1 | -- | 0.90 | positive |
| g34468.t1 | -- | 0.89 | positive |
| g20113.t1 | -- | 0.89 | positive |
| g30688.t1 | -- | 0.89 | positive |
| g14964.t1 | DIACYLGLYCEROL KINASE | 0.87 | positive |
| g30040.t1 | CONTACTIN 5 | 0.86 | positive |
| g4729.t1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED | 0.85 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 142 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
