Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g7306.t1 | HEAT SHOCK PROTEIN 70KDA | 1 | positive |
| g32578.t1 | TRANSLOCATION PROTEIN SEC62 | 0.98 | positive |
| g3978.t1 | PA-PL1 PHOSPHOLIPASE FAMILY | 0.97 | positive |
| g14093.t1 | DNA REPAIR PROTEIN RAD51 HOMOLOG 4 | 0.96 | positive |
| g24136.t1 | MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER | 0.96 | positive |
| g28139.t1 | HERMANSKY-PUDLAK SYNDROME PROTEIN 1 | 0.95 | positive |
| g9314.t1 | 30S RIBOSOMAL PROTEIN S1 | 0.95 | positive |
| g18664.t1 | ALANINE AMINOTRANSFERASE | 0.94 | positive |
| g33192.t1 | HEAT SHOCK PROTEIN 70KDA | 0.94 | positive |
| g24704.t1 | GLUTAMINE-TRNA LIGASE | 0.94 | positive |
| g5575.t1 | DNA2/NAM7 HELICASE FAMILY | 0.94 | positive |
| g12889.t1 | CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN | 0.94 | positive |
| g8767.t1 | CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE | 0.94 | positive |
| g13307.t1 | ALDEHYDE DEHYDROGENASE | 0.93 | positive |
| g29102.t1 | OVOCHYMASE-RELATED | 0.93 | positive |
| g27424.t1 | RIBOFLAVIN KINASE/FMN ADENYLYLTRANSFERASE | 0.93 | positive |
| g16595.t1 | CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED | 0.93 | positive |
| g20290.t1 | -- | 0.93 | positive |
| g6252.t1 | AMINE OXIDASE | 0.93 | positive |
| g33836.t1 | CAMK FAMILY PROTEIN KINASE | 0.93 | positive |
| g4814.t1 | CHAPERONIN | 0.93 | positive |
| g32696.t1 | SUPPRESSOR OF ACTIN MUTATIONS 2/VACUOLAR PROTEIN SORTING 52 | 0.93 | positive |
| g2897.t1 | KELCH DOMAIN-CONTAINING PROTEIN | 0.93 | positive |
| g17068.t1 | AD039 HT014 THIOREDOXIN FAMILY TRP26 | 0.92 | positive |
| g11151.t1 | PEPTIDASE M20 | 0.92 | positive |
| g2336.t1 | GPI TRANSAMIDASE COMPONENT PIG-S | 0.92 | positive |
| g9362.t1 | ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED | 0.92 | positive |
| g15018.t1 | -- | 0.92 | positive |
| g12815.t1 | OS03G0856100 PROTEIN | 0.92 | positive |
| g27.t1 | ARYLSULFATASE | 0.92 | positive |
| g24334.t1 | TRANSLIN AND TRANSLIN ASSOCIATED PROTEIN X | 0.92 | positive |
| g5381.t1 | 28S RIBOSOMAL PROTEIN S15, MITOCHONDRIAL | 0.92 | positive |
| g31609.t1 | PEPTIDASE M20 | 0.91 | positive |
| g16626.t1 | -- | 0.91 | positive |
| g19654.t1 | ORGANIC SOLUTE TRANSPORTER-RELATED | 0.91 | positive |
| g26137.t1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE | 0.91 | positive |
| g36484.t1 | ZINC TRANSPORTER SLC39A7 HISTIDINE-RICH MEMBRANE PROTEIN KE4 | 0.91 | positive |
| g2717.t1 | SISTER CHROMATID COHESION PROTEIN DCC1-RELATED | 0.91 | positive |
| g5515.t1 | DNA LIGASE | 0.91 | positive |
| g542.t1 | GEO12009P1 | 0.90 | positive |
| g3052.t1 | D-GLUTAMATE CYCLASE, MITOCHONDRIAL | 0.90 | positive |
| g9472.t1 | ATP-DEPENDENT (S)-NAD(P)H-HYDRATE DEHYDRATASE FAMILY MEMBER | 0.90 | positive |
| g19939.t1 | RIBOSOME BIOGENESIS PROTEIN | 0.89 | positive |
| g27066.t1 | ACID AMIDASE | 0.87 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 247 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
