Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g751.t1 | BTB DOMAIN-CONTAINING PROTEIN | 1 | positive |
| g10282.t1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP7/14 | 0.98 | positive |
| g5470.t1 | -- | 0.98 | positive |
| g5891.t1 | POU DOMAIN | 0.97 | positive |
| g31569.t1 | PEROXISOMAL SARCOSINE OXIDASE | 0.97 | positive |
| g9927.t1 | CHONDROITIN SYNTHASE | 0.97 | positive |
| g17240.t1 | MACPF DOMAIN-CONTAINING PROTEIN | 0.97 | positive |
| g34792.t1 | SOLUTE CARRIER FAMILY 17 | 0.97 | positive |
| g34959.t1 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 0.97 | positive |
| g4509.t1 | -- | 0.97 | positive |
| g57.t1 | -- | 0.96 | positive |
| g1737.t1 | PROTEIN ZERKNUELLT 1-RELATED | 0.96 | positive |
| g16525.t1 | FI19480P1 | 0.96 | positive |
| g34523.t1 | TRANSMEMBRANE PROTEIN 163 | 0.96 | positive |
| g14759.t1 | PROPERDIN | 0.96 | positive |
| g13137.t1 | GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE | 0.96 | positive |
| g6787.t1 | FORKHEAD BOX PROTEIN | 0.96 | positive |
| g19419.t1 | -- | 0.96 | positive |
| g12522.t1 | COLLAGEN | 0.96 | positive |
| g30142.t1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED | 0.96 | positive |
| g6795.t1 | KREMEN PROTEIN | 0.96 | positive |
| g20488.t1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED | 0.96 | positive |
| g8335.t1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED | 0.96 | positive |
| g35454.t1 | GAMMA GLUTAMYL TRANSPEPTIDASE | 0.96 | positive |
| g15894.t1 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT | 0.96 | positive |
| g31590.t1 | -- | 0.96 | positive |
| g27152.t1 | BONUS, ISOFORM C-RELATED | 0.96 | positive |
| g16209.t1 | -- | 0.96 | positive |
| g32380.t1 | -- | 0.96 | positive |
| g268.t1 | -- | 0.95 | positive |
| g11131.t1 | -- | 0.95 | positive |
| g28833.t1 | -- | 0.95 | positive |
| g563.t1 | -- | 0.95 | positive |
| g8651.t1 | BILE ACID BETA-GLUCOSIDASE-RELATED | 0.94 | positive |
| g11387.t1 | PROMININ PROM PROTEIN | 0.93 | positive |
| g3573.t1 | -- | 0.93 | positive |
| g13731.t1 | IODOTHYRONINE DEIODINASE | 0.90 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 250 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
