Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g7597.t1
Co-expression Network View
Network Legend
Yellow: Query proteins
Green: Interaction proteins
Pink line: Own interaction + positive co-expression
Blue line: Own interaction + negative co-expression
Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.
📋 View Detailed Network Information
Co-expressed Genes of g7597.t1
Gene ID Description PCC Relationship
g7597.t1EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED1positive
g8036.t1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 540.99positive
g19809.t1NUCLEOTIDE KINASE0.99positive
g964.t1EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED0.99positive
g2521.t1REGULATOR OF G-PROTEIN SIGNALING 220.99positive
g10202.t1--0.99positive
g8486.t1TESTIS-SPECIFIC GENE 13 PROTEIN0.99positive
g9301.t1COILED-COIL DOMAIN CONTAINING 1980.99positive
g8487.t1TESTIS-SPECIFIC GENE 13 PROTEIN0.99positive
g2611.t1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 690.99positive
g14804.t1GUANYL-NUCLEOTIDE EXCHANGE FACTOR0.99positive
g5482.t1C5ORF310.99positive
g35039.t1PF60.99positive
g343.t1PECANEX0.99positive
g22111.t1NUCLEOTIDE KINASE0.99positive
g29936.t1LAMIN DM0-RELATED0.99positive
g24067.t1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS0.99positive
g1993.t1--0.99positive
g3181.t1PHOSPHOLIPID SCRAMBLASE-RELATED0.99positive
g26997.t1UNCHARACTERIZED0.99positive
g11848.t1NUCLEOSIDE DIPHOSPHATE KINASE0.99positive
g7566.t1LEUCINE-RICH REPEAT-CONTAINING PROTEIN 510.99positive
g17860.t1DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 10.99positive
g2862.t1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 320.99positive
g18372.t1COILED-COIL DOMAIN-CONTAINING 74A0.99positive
g4737.t1COILED-COIL DOMAIN-CONTAINING PROTEIN 1050.99positive
g7216.t1NMDA RECEPTOR SYNAPTONUCLEAR SIGNALING AND NEURONAL MIGRATION FACTOR0.99positive
g27121.t1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 460.99positive
g110.t1THYMUS, BRAIN AND TESTES-ASSOCIATED0.99positive
g2119.t1--0.99positive
g31562.t1MYB-LIKE PROTEIN X0.99positive
g1456.t1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED0.99positive
g1079.t1UNCHARACTERIZED0.99positive
g27138.t1DYNEIN INTERMEDIATE CHAIN0.99positive
g12125.t1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR0.98positive
g9093.t1WD-40 REPEAT PROTEIN0.98positive
g12451.t1CILIA AND FLAGELLA-ASSOCIATED PROTEIN 58-RELATED0.98positive
g21196.t1SPERMATOGENESIS-ASSOCIATED PROTEIN 480.98positive
g32685.t1--0.98positive
g22951.t1NEUROTRANSMITTER GATED ION CHANNEL0.98positive
g16270.t1UNCHARACTERIZED0.98positive
g11849.t1NUCLEOSIDE DIPHOSPHATE KINASE0.98positive
g18554.t1STABILIZER OF AXONEMAL MICROTUBULES 20.98positive
g15476.t1LEUCINE-RICH REPEAT-CONTAINING PROTEIN 340.98positive
g9771.t1TUMOR NECROSIS FACTOR RECEPTOR0.98positive
g9266.t1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 600.98positive
g3540.t1UNCHARACTERIZED0.98positive
g21629.t1OS05G0345500 PROTEIN0.98positive
g14614.t1TGF-BETA FAMILY0.98positive
g32332.t1CXC DOMAIN-CONTAINING PROTEIN-RELATED0.98positive
g12087.t1--0.98positive
g4618.t1HEPARAN SULFATE SULFOTRANSFERASE0.98positive
g3943.t1DRAB5-RELATED0.97positive
g13344.t1CELL DIVISION PROTEIN KINASE0.97positive
g3530.t1LEUCOKININ RECEPTOR-RELATED0.97positive
g33773.t1UNCHARACTERIZED0.97positive
Further Analysis for Network Members
Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 469 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Gene pairs carried over (10)
Opens the ratio builder with these pairs already loaded. It computes the ratios, then hands both the pairs and the ratios to the network view in one step.
Or take the pairs by hand
Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
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