Co-expression Network Results

Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g7703.t1

Co-expression Network View

Network Legend

Yellow: Query proteins

Green: Interaction proteins

Pink line: Own interaction + positive co-expression

Blue line: Own interaction + negative co-expression

Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.

📋 View Detailed Network Information

Co-expressed Genes of g7703.t1

Gene ID	Description	PCC	Relationship
g7703.t1	PROTEIN C11ORF74	1	positive
g12776.t1	VIRAL IAP-ASSOCIATED FACTOR HOMOLOG	0.95	positive
g28422.t1	UNCHARACTERIZED	0.93	positive
g13810.t1	PRE-MRNA SPLICING FACTOR	0.93	positive
g28318.t1	DALRD3 PROTEIN	0.93	positive
g29776.t1	--	0.92	positive
g10107.t1	IMPORTIN-7, 8, 11	0.92	positive
g8571.t1	DNA-DIRECTED PRIMASE / POLYMERASE PROTEIN	0.92	positive
g14128.t1	TARGET OF RAPAMYCIN COMPLEX 2 SUBUNIT BIT61-RELATED	0.92	positive
g22647.t1	CARBOHYDRATE SULFOTRANSFERASE	0.92	positive
g2873.t1	EBNA2 BINDING PROTEIN P100	0.92	positive
g3582.t1	PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED	0.92	positive
g11795.t1	ELONGATION FACTOR TU-RELATED	0.92	positive
g10632.t1	XYLOSYLTRANSFERASE OXT	0.92	positive
g3203.t1	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	0.91	positive
g20497.t1	--	0.91	positive
g17068.t1	AD039 HT014 THIOREDOXIN FAMILY TRP26	0.90	positive
g8522.t1	CELL DIVISION CYCLE 16,23,27	0.90	positive
g4501.t1	TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN	0.89	positive
g18663.t1	ALANINE AMINOTRANSFERASE	0.82	positive

Further Analysis for Network Members

Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log₂((mean of group A + 1) / (mean of group B + 1)). This network has 67 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Or take the pairs by hand

g10107.t1 g2873.t1
g13810.t1 g10107.t1
g29776.t1 g13810.t1
g13810.t1 g2873.t1
g10107.t1 g8571.t1
g29776.t1 g2873.t1
g14128.t1 g10632.t1
g12776.t1 g11795.t1
g11795.t1 g2873.t1
g29776.t1 g11795.t1

Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.