Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g7816.t1
Co-expression Network View
Network Legend
Yellow: Query proteins
Green: Interaction proteins
Pink line: Own interaction + positive co-expression
Blue line: Own interaction + negative co-expression
Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.
📋 View Detailed Network Information
Co-expressed Genes of g7816.t1
Gene ID Description PCC Relationship
g7816.t1DRAB11-RELATED1positive
g19809.t1NUCLEOTIDE KINASE0.98positive
g8487.t1TESTIS-SPECIFIC GENE 13 PROTEIN0.98positive
g11849.t1NUCLEOSIDE DIPHOSPHATE KINASE0.98positive
g26999.t1UNCHARACTERIZED0.98positive
g30657.t1COILED-COIL DOMAIN-CONTAINING PROTEIN 1620.98positive
g328.t1MULTIPLE INOSITOL POLYPHOSPHATE PHOSPHATASE-RELATED0.98positive
g11892.t1WD-40 REPEAT PROTEIN0.98positive
g9093.t1WD-40 REPEAT PROTEIN0.98positive
g11848.t1NUCLEOSIDE DIPHOSPHATE KINASE0.98positive
g8530.t1--0.98positive
g10586.t1--0.98positive
g24067.t1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS0.98positive
g2832.t1DYNACTIN 1-RELATED MICROTUBULE-BINDING0.98positive
g10472.t1LEUCOKININ RECEPTOR-RELATED0.98positive
g19059.t1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 700.98positive
g181.t1TETRASPANIN0.97positive
g30241.t1PROTEIN C21ORF590.97positive
g5151.t1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED0.97positive
g15848.t1WD40 REPEAT DOMAIN 950.97positive
g6732.t1--0.96positive
Further Analysis for Network Members
Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 89 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Gene pairs carried over (10)
Opens the ratio builder with these pairs already loaded. It computes the ratios, then hands both the pairs and the ratios to the network view in one step.
Or take the pairs by hand
Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
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