Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g7906.t1
Co-expression Network View
Network Legend
Yellow: Query proteins
Green: Interaction proteins
Pink line: Own interaction + positive co-expression
Blue line: Own interaction + negative co-expression
Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.
📋 View Detailed Network Information
Co-expressed Genes of g7906.t1
Gene ID Description PCC Relationship
g7906.t1POLYCYSTIN FAMILY MEMBER1positive
g5016.t1ADENYLATE CYCLASE TYPE 11.00positive
g23600.t1G PROTEIN-COUPLED RECEPTOR1.00positive
g6890.t1UNCHARACTERIZED0.99positive
g26779.t15-HYDROXYTRYPTAMINE RECEPTOR0.99positive
g34877.t1LEUCOKININ RECEPTOR-RELATED0.99positive
g19669.t1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR0.99positive
g3364.t1GUANYLYL CYCLASE0.99positive
g27864.t1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS0.99positive
g3245.t15-HYDROXYTRYPTAMINE RECEPTOR0.99positive
g26771.t1TOLL-LIKE RECEPTOR0.99positive
g17731.t1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS0.99positive
g7885.t1-0.99positive
g18961.t1G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER0.99positive
g17098.t1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR0.99positive
g30771.t1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR0.99positive
g7546.t1--0.99positive
g10028.t1ANK_REP_REGION DOMAIN-CONTAINING PROTEIN0.99positive
g11666.t1TUMOR PROTEIN P53-INDUCIBLE PROTEIN 110.99positive
g16164.t1TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 130.99positive
g16163.t1TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 130.99positive
g35342.t1BRORIN FAMILY MEMBER0.99positive
g2594.t1SYNAPTOTAGMIN0.99positive
g29662.t1RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 10.99positive
g562.t1VOLTAGE-GATED POTASSIUM CHANNEL0.99positive
g1886.t1PROPERDIN0.99positive
g16902.t1IONOTROPIC GLUTAMATE RECEPTOR0.99positive
g27015.t1CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A0.99positive
g29503.t1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 600.99positive
g8733.t1CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN0.99positive
g498.t1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED0.99positive
g5150.t1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED0.99positive
g4058.t1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED0.99positive
g7884.t1--0.99positive
g15769.t1CYSTEINE-RICH SECRETORY PROTEIN-RELATED0.99positive
g2901.t1ANKYRIN REPEAT PROTEIN0.99positive
g5253.t1IONOTROPIC GLUTAMATE RECEPTOR0.99positive
g7304.t1ACROSIN-RELATED0.99positive
g17621.t1--0.99positive
g27167.t1CENTROSOMAL PROTEIN 20.99positive
g31403.t1--0.99positive
g12573.t1VOLTAGE-DEPENDENT CALCIUM CHANNEL BETA SUBUNIT0.99positive
g22721.t1PROSTAGLANDIN G/H SYNTHASE0.98positive
g4985.t1VOLTAGE-GATED POTASSIUM CHANNEL0.98positive
Further Analysis for Network Members
Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 303 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Gene pairs carried over (10)
Opens the ratio builder with these pairs already loaded. It computes the ratios, then hands both the pairs and the ratios to the network view in one step.
Or take the pairs by hand
Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
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