Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g7948.t1 | ZINC FINGER PROTEIN 207 | 1 | positive |
| g20613.t1 | CONSTITUTIVE COACTIVATOR OF PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA | 0.98 | positive |
| g784.t1 | -- | 0.97 | positive |
| g35155.t1 | CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR | 0.97 | positive |
| g13666.t1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA | 0.96 | positive |
| g28994.t1 | ACTIVATING TRANSCRIPTION FACTOR 7 INTERACTING PROTEIN | 0.96 | positive |
| g9494.t1 | -- | 0.96 | positive |
| g7072.t1 | -- | 0.96 | positive |
| g20091.t1 | UPF0449 PROTEIN C19ORF25 | 0.96 | positive |
| g17617.t1 | ANKYRIN REPEAT PROTEIN | 0.96 | positive |
| g14997.t1 | -- | 0.95 | positive |
| g12226.t1 | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 0.95 | positive |
| g12416.t1 | LIM DOMAIN-CONTAINING PROTEIN | 0.95 | positive |
| g4009.t1 | XPA-BINDING PROTEIN 1-RELATED | 0.95 | positive |
| g35029.t1 | T-BOX PROTEIN-RELATED | 0.94 | positive |
| g8830.t1 | DNAJ-LIKE-2, ISOFORM A-RELATED | 0.94 | positive |
| g3036.t1 | -- | 0.94 | positive |
| g8665.t1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED | 0.94 | positive |
| g15327.t1 | PHOSPHATIDYLCHOLINE TRANSFER PROTEIN | 0.94 | positive |
| g15695.t1 | SOX TRANSCRIPTION FACTOR | 0.94 | positive |
| g5103.t1 | -- | 0.94 | positive |
| g10894.t1 | -- | 0.93 | positive |
| g10790.t1 | TRANSCRIPTIONAL ENHANCER FACTOR TEF RELATED | 0.93 | positive |
| g6387.t1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 9 | 0.93 | positive |
| g14178.t1 | APOPTOTIC CHROMATIN CONDENSATION INDUCER IN THE NUCLEUS | 0.93 | positive |
| g27176.t1 | ANKYRIN REPEAT-CONTAINING | 0.93 | positive |
| g13065.t1 | HISTONE ACETYLTRANSFERASE | 0.93 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 136 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
