Co-expression Network Results

Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g8024.t1

Co-expression Network View

Network Legend

Yellow: Query proteins

Green: Interaction proteins

Pink line: Own interaction + positive co-expression

Blue line: Own interaction + negative co-expression

Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.

📋 View Detailed Network Information

Co-expressed Genes of g8024.t1

Gene ID	Description	PCC	Relationship
g8024.t1	PEPTIDASE S49	1	positive
g8755.t1	--	0.94	positive
g3902.t1	LEUCINE AMINOPEPTIDASE-RELATED	0.92	positive
g21457.t1	SEC10	0.91	positive
g34967.t1	GTP-BINDING PROTEIN-RELATED	0.91	positive
g3269.t1	DEHYDROGENASE RELATED	0.90	positive
g20596.t1	ACYL CARRIER PROTEIN	0.90	positive
g15083.t1	NUCLEOSIDE DIPHOSPHATE KINASE	0.89	positive
g341.t1	NOTCH LIGAND FAMILY MEMBER	0.89	positive
g7132.t1	TIP120	0.89	positive
g10447.t1	FRINGE-RELATED	0.89	positive
g35048.t1	ENOYL-COA HYDRATASE-RELATED	0.89	positive
g7234.t1	UNCHARACTERIZED	0.89	positive
g27495.t1	MYOSIN LIGHT CHAIN 1, 3	0.88	positive
g8533.t1	PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED	0.88	positive
g6915.t1	UNCHARACTERIZED	0.88	positive
g3243.t1	NAD(P) TRANSHYDROGENASE	0.88	positive
g4672.t1	PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47	0.87	positive
g34668.t1	PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER	0.86	positive
g35818.t1	BADF TYPE ATPASE DOMAIN-CONTAINING PROTEIN	0.86	positive
g9639.t1	--	0.86	positive

Further Analysis for Network Members

Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log₂((mean of group A + 1) / (mean of group B + 1)). This network has 91 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Or take the pairs by hand

g35048.t1 g3269.t1
g34967.t1 g3269.t1
g35048.t1 g15083.t1
g3902.t1 g3269.t1
g15083.t1 g3269.t1
g34967.t1 g21457.t1
g34967.t1 g341.t1
g20596.t1 g15083.t1
g35048.t1 g34967.t1
g34967.t1 g15083.t1

Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.