Co-expression Network Results

Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g8440.t1

Co-expression Network View

Network Legend

Yellow: Query proteins

Green: Interaction proteins

Pink line: Own interaction + positive co-expression

Blue line: Own interaction + negative co-expression

Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.

📋 View Detailed Network Information

Co-expressed Genes of g8440.t1

Gene ID	Description	PCC	Relationship
g8440.t1	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18	1	positive
g20671.t1	PRE-MRNA SPLICING FACTOR PRP8	0.93	positive
g3945.t1	FMS INTERACTING PROTEIN	0.93	positive
g6578.t1	CLEAVAGE STIMULATION FACTOR SUBUNIT 2	0.92	positive
g2307.t1	CYCLIN	0.90	positive
g10892.t1	--	0.89	positive
g33532.t1	WILMS' TUMOR 1-ASSOCIATING PROTEIN	0.86	positive
g7613.t1	CYTOSOLIC RESINIFERATOXIN BINDING PROTEIN RBP-26	0.86	positive
g2558.t1	--	0.86	positive
g388.t1	ZINC FINGER PROTEIN-LIKE 1	0.85	positive
g26492.t1	HISTONE DEACETYLASE 2-RELATED	0.85	positive
g31982.t1	PESCADILLO - RELATED	0.84	positive
g1022.t1	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	0.83	positive
g785.t1	SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 2	0.82	positive
g3167.t1	LD11652P	0.81	positive
g16551.t1	PRE-MRNA-SPLICING FACTOR RBM22	0.80	positive
g33703.t1	CENTROSOMAL PROTEIN OF 44 KDA	0.80	positive
g13798.t1	CHARGED MULTIVESICULAR BODY PROTEIN	0.75	positive

Further Analysis for Network Members

Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log₂((mean of group A + 1) / (mean of group B + 1)). This network has 65 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Or take the pairs by hand

g20671.t1 g8440.t1
g7613.t1 g388.t1
g8440.t1 g3945.t1
g6578.t1 g2558.t1
g10892.t1 g3945.t1
g26492.t1 g6578.t1
g8440.t1 g6578.t1
g33532.t1 g6578.t1
g10892.t1 g6578.t1
g20671.t1 g388.t1

Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.