Co-expression Network Results

Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g8461.t1

Co-expression Network View

Network Legend

Yellow: Query proteins

Green: Interaction proteins

Pink line: Own interaction + positive co-expression

Blue line: Own interaction + negative co-expression

Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.

📋 View Detailed Network Information

Co-expressed Genes of g8461.t1

Gene ID	Description	PCC	Relationship
g8461.t1	--	1	positive
g3592.t1	SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT ALPHA	0.94	positive
g7540.t1	--	0.94	positive
g16730.t1	PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1	0.94	positive
g29170.t1	GTP-BINDING PROTEIN-RELATED	0.94	positive
g17188.t1	UBIQUITINATION FACTOR E4	0.94	positive
g12735.t1	GOLGI MEMBRANE PROTEIN YIP1	0.94	positive
g34813.t1	RPE-SPONDIN	0.94	positive
g12970.t1	TRANSMEMBRANE 9 SUPERFAMILY PROTEIN	0.94	positive
g10026.t1	PEROXISOMAL BIOGENESIS FACTOR 11	0.94	positive
g14797.t1	ATP-BINDING TRANSPORT PROTEIN-RELATED	0.94	positive
g3373.t1	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	0.93	positive
g30855.t1	26S PROTEASOME REGULATORY SUBUNIT	0.93	positive
g9776.t1	COLLAGEN ALPHA	0.93	positive
g17149.t1	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE	0.93	positive
g4209.t1	FCH AND DOUBLE SH3 DOMAINS PROTEIN	0.92	positive
g574.t1	CHONDROITIN SYNTHASE	0.92	positive
g8822.t1	PIKACHURIN-LIKE PROTEIN	0.92	positive
g9772.t1	COLLAGEN ALPHA	0.92	positive
g29605.t1	SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER	0.90	positive
g28992.t1	BIFUNCTIONAL TH2 PROTEIN	0.73	positive

Further Analysis for Network Members

Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log₂((mean of group A + 1) / (mean of group B + 1)). This network has 67 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Or take the pairs by hand

g9776.t1 g9772.t1
g34813.t1 g17149.t1
g16730.t1 g12970.t1
g34813.t1 g7540.t1
g7540.t1 g8822.t1
g4209.t1 g3373.t1
g17149.t1 g7540.t1
g10026.t1 g30855.t1
g29170.t1 g12735.t1
g7540.t1 g9772.t1

Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.