Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g8516.t1 | LD33804P | 1 | positive |
| g26473.t1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 0.96 | positive |
| g14276.t1 | YL-1 PROTEIN TRANSCRIPTION FACTOR-LIKE 1 | 0.95 | positive |
| g5212.t1 | POLYCOMB GROUP PROTEIN PC | 0.95 | positive |
| g8665.t1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED | 0.95 | positive |
| g12416.t1 | LIM DOMAIN-CONTAINING PROTEIN | 0.95 | positive |
| g21226.t1 | TROPOMYOSIN | 0.94 | positive |
| g23119.t1 | TRANSLATION INITIATION FACTOR-RELATED | 0.94 | positive |
| g20241.t1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U FAMILY MEMBER | 0.94 | positive |
| g28599.t1 | 28 KDA HEAT- AND ACID-STABLE PHOSPHOPROTEIN PDGF-ASSOCIATED PROTEIN | 0.93 | positive |
| g10086.t1 | TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN | 0.93 | positive |
| g3036.t1 | -- | 0.93 | positive |
| g8867.t1 | RIBOSOMAL PROTEIN L7AE FAMILY MEMBER | 0.93 | positive |
| g8716.t1 | 60 KDA RIBONUCLEOPROTEIN SSA/RO | 0.93 | positive |
| g18374.t1 | PRE-MRNA-PROCESSING FACTOR 19 | 0.92 | positive |
| g35155.t1 | CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR | 0.92 | positive |
| g28199.t1 | E3 UBIQUITIN-PROTEIN LIGASE TRIP12 | 0.92 | positive |
| g30678.t1 | CHROMOSOME 20 ORF85 FAMILY MEMBER | 0.91 | positive |
| g12007.t1 | GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5 | 0.90 | positive |
| g9626.t1 | ER LUMEN PROTEIN RETAINING RECEPTOR | 0.89 | positive |
| g7231.t1 | VESICULAR, OVEREXPRESSED IN CANCER, PROSURVIVAL PROTEIN 1 | 0.89 | positive |
| g28550.t1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 0.89 | positive |
| g23834.t1 | LIGAND BINDING DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_6G14370)-RELATED | 0.89 | positive |
| g18043.t1 | ZGC:195170 | 0.87 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 96 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
