Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g8857.t1 | AGAP004327-PA | 1 | positive |
| g1944.t1 | -- | 0.99 | positive |
| g6270.t1 | BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER | 0.98 | positive |
| g6359.t1 | -- | 0.98 | positive |
| g28014.t1 | SERINE-THREONINE PROTEIN KINASE | 0.98 | positive |
| g10452.t1 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED | 0.98 | positive |
| g2094.t1 | -- | 0.98 | positive |
| g6532.t1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 87 | 0.98 | positive |
| g8373.t1 | SIGNAL RECOGNITION PARTICLE 72 | 0.98 | positive |
| g9644.t1 | AXIN | 0.97 | positive |
| g15522.t1 | RIBONUCLEASE H2 SUBUNIT B | 0.97 | positive |
| g6450.t1 | DUAL SPECIFICITY PROTEIN PHOSPHATASE | 0.97 | positive |
| g35245.t1 | -- | 0.97 | positive |
| g33269.t1 | -- | 0.97 | positive |
| g11081.t1 | -- | 0.97 | positive |
| g27203.t1 | WD40 REPEAT PROTEIN | 0.97 | positive |
| g29439.t1 | NUCLEAR AUTOANTIGENIC SPERM PROTEIN NASP -RELATED | 0.97 | positive |
| g7052.t1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 0.97 | positive |
| g27260.t1 | SIDEROFLEXIN | 0.97 | positive |
| g11713.t1 | ADENOSYLHOMOCYSTEINASE | 0.97 | positive |
| g1971.t1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 51 | 0.97 | positive |
| g12395.t1 | LYSOSOMAL ACID LIPASE-RELATED | 0.97 | positive |
| g13385.t1 | SERINE/THREONINE-PROTEIN KINASE RIO1 | 0.96 | positive |
| g15643.t1 | TUBULIN | 0.96 | positive |
| g4778.t1 | CELL DIVISION PROTEIN KINASE | 0.96 | positive |
| g23802.t1 | -- | 0.96 | positive |
| g2803.t1 | IP01015P-RELATED | 0.96 | positive |
| g22283.t1 | -- | 0.96 | positive |
| g7841.t1 | YEAST SPT2-RELATED | 0.96 | positive |
| g15786.t1 | ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN | 0.96 | positive |
| g27894.t1 | HISTIDINE TRIAD HIT PROTEIN | 0.96 | positive |
| g7487.t1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 | 0.96 | positive |
| g29451.t1 | -- | 0.96 | positive |
| g704.t1 | METHYL-CPG BINDING PROTEIN, MBD | 0.96 | positive |
| g10627.t1 | RAD9, HUS1, RAD1-INTERACTING NUCLEAR ORPHAN PROTEIN 1 | 0.95 | positive |
| g9780.t1 | -- | 0.95 | positive |
| g15492.t1 | DDRGK DOMAIN-CONTAINING PROTEIN 1 | 0.95 | positive |
| g32453.t1 | -- | 0.95 | positive |
| g10814.t1 | DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED | 0.94 | positive |
| g17022.t1 | MITOCHONDRIAL 39S RIBOSOMAL PROTEIN L49 | 0.94 | positive |
| g9762.t1 | ALDEHYDE DEHYDROGENASE-RELATED | 0.94 | positive |
| g33500.t1 | -- | 0.94 | positive |
| g2792.t1 | HOMEOBOX PROTEIN NKX | 0.94 | positive |
| g27137.t1 | -- | 0.93 | positive |
| g3857.t1 | ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN | 0.92 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 352 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
