Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g8971.t1 | -- | 1 | positive |
| g7350.t1 | PERICENTRIN-LIKE PROTEIN, ISOFORM F | 0.98 | positive |
| g13101.t1 | CDC73 DOMAIN PROTEIN | 0.97 | positive |
| g27061.t1 | RAB GDP-DISSOCIATION INHIBITOR | 0.97 | positive |
| g6623.t1 | ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 | 0.97 | positive |
| g10191.t1 | ZINC FINGER PROTEIN 294 | 0.97 | positive |
| g23603.t1 | SARCOMA ANTIGEN NY-SAR-24/CYTOSKELETAL PROTEIN SOJO | 0.97 | positive |
| g14500.t1 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 0.96 | positive |
| g24953.t1 | -- | 0.96 | positive |
| g16765.t1 | PHOSPHATIDYLCHOLINE TRANSFER PROTEIN | 0.96 | positive |
| g22809.t1 | CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS | 0.96 | positive |
| g35490.t1 | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED | 0.96 | positive |
| g6191.t1 | SERINE/THREONINE-PROTEIN KINASE | 0.96 | positive |
| g28018.t1 | ALPHA-MANNOSIDASE | 0.96 | positive |
| g1428.t1 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR | 0.96 | positive |
| g28145.t1 | SPECKLE-TYPE POZ PROTEIN | 0.96 | positive |
| g12287.t1 | NETRIN/LAMININ-RELATED | 0.96 | positive |
| g3212.t1 | LONG-CHAIN-FATTY-ACID--COA LIGASE | 0.95 | positive |
| g11655.t1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12 | 0.95 | positive |
| g4039.t1 | AP-5 COMPLEX SUBUNIT ZETA-1 | 0.95 | positive |
| g24339.t1 | PRE-MRNA SPLICING FACTOR | 0.95 | positive |
| g27161.t1 | ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE | 0.95 | positive |
| g12023.t1 | ZINC FINGER PROTEIN-RELATED | 0.95 | positive |
| g16285.t1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR | 0.95 | positive |
| g23507.t1 | LEUCINE RICH REPEAT FAMILY PROTEIN | 0.95 | positive |
| g17701.t1 | INOSITOL 5-PHOSPHATASE | 0.95 | positive |
| g35047.t1 | GOLGI-LOCALIZED, GAMMA-ADAPTIN EAR CONTAINING, ARF BINDING PROTEIN | 0.94 | positive |
| g35508.t1 | MYOTONIC DYSTROPHY S/T KINASE-RELATED | 0.94 | positive |
| g21082.t1 | OVOCHYMASE-RELATED | 0.94 | positive |
| g13338.t1 | HERMANSKY-PUDLAK SYNDROME 3 PROTEIN | 0.94 | positive |
| g22787.t1 | ROTATIN | 0.94 | positive |
| g30044.t1 | ARGININE-TRNA-PROTEIN TRANSFERASE 1 | 0.94 | positive |
| g27968.t1 | RECOMBINING BINDING PROTEIN SUPPRESSOR OF HAIRLESS | 0.93 | positive |
| g12046.t1 | PAPILLOMAVIRUS REGULATORY FACTOR PRF-1 | 0.93 | positive |
| g17387.t1 | -- | 0.93 | positive |
| g34407.t1 | KELCH PROTEIN | 0.92 | positive |
| g7615.t1 | -- | 0.92 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 183 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
