Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g9273.t1 | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED | 1 | positive |
| g7552.t1 | RHO-TYPE GTPASE ACTIVATING PROTEIN | 0.96 | positive |
| g12287.t1 | NETRIN/LAMININ-RELATED | 0.96 | positive |
| g1837.t1 | ANOCTAMIN | 0.95 | positive |
| g18266.t1 | TRANSCRIPTION ELONGATION FACTOR SPT6 | 0.95 | positive |
| g30314.t1 | -- | 0.95 | positive |
| g19185.t1 | TNF RECEPTOR ASSOCIATED FACTOR | 0.95 | positive |
| g10812.t1 | PERIOSTIN-RELATED | 0.95 | positive |
| g3316.t1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED | 0.95 | positive |
| g10375.t1 | ZGC:195170 | 0.95 | positive |
| g9772.t1 | COLLAGEN ALPHA | 0.94 | positive |
| g24367.t1 | -- | 0.94 | positive |
| g2067.t1 | COLLAGEN ALPHA | 0.94 | positive |
| g9776.t1 | COLLAGEN ALPHA | 0.94 | positive |
| g16730.t1 | PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1 | 0.94 | positive |
| g6524.t1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN | 0.94 | positive |
| g32416.t1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 158 | 0.94 | positive |
| g7540.t1 | -- | 0.94 | positive |
| g13790.t1 | ANGIOTENSIN-CONVERTING ENZYME | 0.93 | positive |
| g12968.t1 | -- | 0.93 | positive |
| g27860.t1 | CALCIUM-ACTIVATED POTASSIUM CHANNEL SUBUNIT BETA | 0.93 | positive |
| g17188.t1 | UBIQUITINATION FACTOR E4 | 0.93 | positive |
| g12970.t1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN | 0.93 | positive |
| g6410.t1 | -- | 0.93 | positive |
| g10302.t1 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED | 0.93 | positive |
| g212.t1 | RETROTRANSPOSON | 0.92 | positive |
| g12675.t1 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 0.92 | positive |
| g9445.t1 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN | 0.91 | positive |
| g19663.t1 | SOLUTE CARRIER FAMILY 33 ACETYL-COA TRANSPORTER -RELATED | 0.90 | positive |
| g17445.t1 | RETROTRANSPOSON | 0.85 | positive |
| g29616.t1 | -- | 0.78 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 120 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
