Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g9548.t1 | TUBBY-RELATED | 1 | positive |
| g20916.t1 | GTP-BINDING PROTEIN ALPHA SUBUNIT | 0.98 | positive |
| g10847.t1 | UNNAMED PRODUCT | 0.98 | positive |
| g18298.t1 | -- | 0.98 | positive |
| g15843.t1 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II | 0.97 | positive |
| g121.t1 | TRANSCRIPTION FACTOR ONECUT | 0.97 | positive |
| g16373.t1 | RAN BINDING PROTEIN 9-RELATED | 0.97 | positive |
| g16960.t1 | -- | 0.97 | positive |
| g11629.t1 | KNIRPS-RELATED PROTEIN-RELATED | 0.97 | positive |
| g19449.t1 | -- | 0.97 | positive |
| g5620.t1 | TRANSCRIPTION INTERMEDIARY FACTOR | 0.97 | positive |
| g35727.t1 | UNCHARACTERIZED | 0.97 | positive |
| g35419.t1 | -- | 0.97 | positive |
| g18457.t1 | KELCH PROTEIN | 0.96 | positive |
| g6093.t1 | FAST LEU-RICH DOMAIN-CONTAINING | 0.96 | positive |
| g18351.t1 | TTC17 PROTEIN | 0.96 | positive |
| g12759.t1 | SLINGSHOT PROTEIN PHOSPHATASE HOMOLOG | 0.96 | positive |
| g3080.t1 | POLYCYSTIN FAMILY MEMBER | 0.96 | positive |
| g13575.t1 | FORKHEAD BOX PROTEIN J2 FAMILY MEMBER | 0.96 | positive |
| g16533.t1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13 | 0.96 | positive |
| g8043.t1 | ZINC FINGER PROTEIN | 0.96 | positive |
| g11552.t1 | METHYL-CPG BINDING PROTEIN, DROSOPHILA | 0.96 | positive |
| g7886.t1 | MYELIN TRANSCRIPTION FACTOR 1-RELATED | 0.96 | positive |
| g29834.t1 | HAMARTIN | 0.96 | positive |
| g27737.t1 | DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED | 0.96 | positive |
| g6288.t1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR | 0.96 | positive |
| g2587.t1 | P140CAP/SNIP-RELATED | 0.95 | positive |
| g4202.t1 | ANAPHASE-PROMOTING COMPLEX SUBUNIT 2 | 0.95 | positive |
| g16369.t1 | RAN BINDING PROTEIN 9-RELATED | 0.95 | positive |
| g14880.t1 | DDB1- AND CUL4-ASSOCIATED FACTOR 15 | 0.95 | positive |
| g7257.t1 | RING FINGER PROTEIN 127 | 0.95 | positive |
| g6838.t1 | SERINE-THREONINE PROTEIN KINASE | 0.95 | positive |
| g26021.t1 | FORKHEAD BOX PROTEIN J2 FAMILY MEMBER | 0.95 | positive |
| g335.t1 | VACUOLAR PROTEIN SORTING 54 | 0.95 | positive |
| g34387.t1 | -- | 0.95 | positive |
| g22911.t1 | LD33804P | 0.95 | positive |
| g16961.t1 | ABC TRANSPORTER G FAMILY MEMBER 28 | 0.95 | positive |
| g23936.t1 | POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED | 0.95 | positive |
| g21236.t1 | PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER | 0.94 | positive |
| g8884.t1 | PROBABLE MEMBRANE PROTEIN DUF221-RELATED | 0.94 | positive |
| g3388.t1 | -- | 0.94 | positive |
| g34907.t1 | RASSF | 0.94 | positive |
| g769.t1 | GLYCOGENIN SUBFAMILY MEMBER | 0.94 | positive |
| g22912.t1 | LD33804P | 0.94 | positive |
| g15870.t1 | PROTEIN TORNADO 1 | 0.94 | positive |
| g15176.t1 | INSULIN RECEPTOR SUBSTRATE | 0.92 | positive |
| g19717.t1 | LD33804P | 0.92 | positive |
| g16218.t1 | DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7-RELATED | 0.92 | positive |
| g35161.t1 | UNCHARACTERIZED | 0.83 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 321 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
