Functional Domain Search

Search every annotated genome in CnidoSite by protein domain, not just by gene ID. Enter an accession (IPR016024, PF12848, K13752, GO:0005615, PTHR19143) or a free-text term (kinase, Armadillo, homeobox). One query covers 148 annotated genomes.

InterProPfamKEGG pathwayGene OntologyPANTHER
Examples: IPR016024 PF12848 K13752 homeobox  ·  matching is exact on the identifier and partial on the description.

Found 6 gene–annotation pairs matching PF00158 across 1 genomes (restricted to AAURI2) · 59 ms.

Species with hits:← all speciesAAURI2 6
SpeciesGene IDPfam termMatchSourceBrowser
AAURI2scaffold10.g100.t1PF00158Sigma-54 interaction domainInterproscanJBrowse
AAURI2scaffold10.g100.t1PF00158Sigma-54 interaction domainInterproscanJBrowse
AAURI2scaffold2352.g2.t1PF00158Sigma-54 interaction domainInterproscanJBrowse
AAURI2scaffold2352.g6.t1PF00158Sigma-54 interaction domainInterproscanJBrowse
AAURI2scaffold10.g2.t1PF00158Sigma-54 interaction domainInterproscanJBrowse
AAURI2scaffold10.g63.t1PF00158Sigma-54 interaction domainInterproscanJBrowse

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