Functional Domain Search

Search every annotated genome in CnidoSite by protein domain, not just by gene ID. Enter an accession (IPR016024, PF12848, K13752, GO:0005615, PTHR19143) or a free-text term (kinase, Armadillo, homeobox). One query covers 148 annotated genomes.

InterProPfamKEGG pathwayGene OntologyPANTHER
Examples: IPR016024 PF12848 K13752 homeobox  ·  matching is exact on the identifier and partial on the description.

Found 7 gene–annotation pairs matching PF04560 across 1 genomes (restricted to AFLOR) · 74 ms.

Species with hits:← all speciesAFLOR 7
SpeciesGene IDPfam termMatchSourceBrowser
AFLORaflo_s0002.g121.t2PF04560RNA polymerase Rpb2, domain 7InterproscanJBrowse
AFLORaflo_s0002.g121.t3PF04560RNA polymerase Rpb2, domain 7InterproscanJBrowse
AFLORaflo_s0128.g8.t1PF04560RNA polymerase Rpb2, domain 7InterproscanJBrowse
AFLORaflo_s0128.g8.t2PF04560RNA polymerase Rpb2, domain 7InterproscanJBrowse
AFLORaflo_s0128.g8.t3PF04560RNA polymerase Rpb2, domain 7InterproscanJBrowse
AFLORaflo_s1937.g1.t1PF04560RNA polymerase Rpb2, domain 7InterproscanJBrowse
AFLORaflo_s0002.g121.t1PF04560RNA polymerase Rpb2, domain 7InterproscanJBrowse

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