Functional Domain Search

Search every annotated genome in CnidoSite by protein domain, not just by gene ID. Enter an accession (IPR016024, PF12848, K13752, GO:0005615, PTHR19143) or a free-text term (kinase, Armadillo, homeobox). One query covers 148 annotated genomes.

InterProPfamKEGG pathwayGene OntologyPANTHER
Examples: IPR016024 PF12848 K13752 homeobox  ·  matching is exact on the identifier and partial on the description.

Found 8 gene–annotation pairs matching PF04561 across 1 genomes (restricted to HOCTO) · 87 ms.

Species with hits:← all speciesHOCTO 8
SpeciesGene IDPfam termMatchSourceBrowser
HOCTOg14971.t1.1PF04561RNA polymerase Rpb2, domain 2InterproscanJBrowse
HOCTOBRAKERHOCP00005011206.1PF04561RNA polymerase Rpb2, domain 2InterproscanJBrowse
HOCTOg2448.t2.1PF04561RNA polymerase Rpb2, domain 2InterproscanJBrowse
HOCTOBRAKERHOCP00005006437.1PF04561RNA polymerase Rpb2, domain 2InterproscanJBrowse
HOCTOBRAKERHOCP00005006436.1PF04561RNA polymerase Rpb2, domain 2InterproscanJBrowse
HOCTOg2448.t1.1PF04561RNA polymerase Rpb2, domain 2InterproscanJBrowse
HOCTOBRAKERHOCP00005017002.1PF04561RNA polymerase Rpb2, domain 2InterproscanJBrowse
HOCTOg166.t1.1PF04561RNA polymerase Rpb2, domain 2InterproscanJBrowse

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