Functional Domain Search

Search every annotated genome in CnidoSite by protein domain, not just by gene ID. Enter an accession (IPR016024, PF12848, K13752, GO:0005615, PTHR19143) or a free-text term (kinase, Armadillo, homeobox). One query covers 148 annotated genomes.

InterProPfamKEGG pathwayGene OntologyPANTHER
Examples: IPR016024 PF12848 K13752 homeobox  ·  matching is exact on the identifier and partial on the description.

Found 7 gene–annotation pairs matching PF04983 across 1 genomes (restricted to AAURI1) · 77 ms.

Species with hits:← all speciesAAURI1 7
SpeciesGene IDPfam termMatchSourceBrowser
AAURI1scaffold116.g69.t1PF04983RNA polymerase Rpb1, domain 3InterproscanJBrowse
AAURI1scaffold2.g181.t3PF04983RNA polymerase Rpb1, domain 3InterproscanJBrowse
AAURI1scaffold40.g73.t3PF04983RNA polymerase Rpb1, domain 3InterproscanJBrowse
AAURI1scaffold40.g73.t2PF04983RNA polymerase Rpb1, domain 3InterproscanJBrowse
AAURI1scaffold2.g181.t4PF04983RNA polymerase Rpb1, domain 3InterproscanJBrowse
AAURI1scaffold40.g73.t1PF04983RNA polymerase Rpb1, domain 3InterproscanJBrowse
AAURI1scaffold2.g181.t1PF04983RNA polymerase Rpb1, domain 3InterproscanJBrowse

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