Transcription factors (TFs) of are usually classified into different families according to their conserved DBDs, which was based on the rule of AnimalTFDB 4.0 and self-build HMM profiles.
| Gene | Pfam/Self-build | DNA Binding Domain | Full name | Description | Jbrowse |
|---|---|---|---|---|---|
| 1139_t.1 | PF00046 | Homeobox | Homeodomain | ALX homeobox protein 1 [Hydra vulgaris] | Jbrowse |
| 34974_t.1 | PF00046 | Homeobox | Homeodomain | retinal homeobox protein Rx-B-like isoform X1 [Hydra vulgaris] | Jbrowse |
| 4270_t.1 | PF00046 | Homeobox | Homeodomain | paired mesoderm homeobox protein 2 [Hydra vulgaris] | Jbrowse |
| 630_t.1 | PF00046 | Homeobox | Homeodomain | homeobox protein orthopedia [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000000163.1 | PF00046 | Homeobox | Homeodomain | cnox-2 homeoprotein [Hydra viridissima] | Jbrowse |
| BRAKERKREP00000000454.1 | PF00046 | Homeobox | Homeodomain | pre-B-cell leukemia transcription factor 1 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000001104.1 | PF00046 | Homeobox | Homeodomain | zinc metalloproteinase nas-15 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000001105.1 | PF00046 | Homeobox | Homeodomain | zinc metalloproteinase nas-15 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000002154.1 | PF00046 | Homeobox | Homeodomain | ALX homeobox protein 1 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000002724.1 | PF00046 | Homeobox | Homeodomain | uncharacterized protein LOC124815092 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000003111.1 | PF00046 | Homeobox | Homeodomain | homeobox protein Hox-B10a-like [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000003317.1 | PF00046 | Homeobox | Homeodomain | POU domain, class 4, transcription factor 2 isoform X2 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000003592.1 | PF00046 | Homeobox | Homeodomain | diencephalon/mesencephalon homeobox protein 1 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000003996.1 | PF00046 | Homeobox | Homeodomain | homeobox protein mab-5-like [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000004032.1 | PF00046 | Homeobox | Homeodomain | homeobox protein ceh-28 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000004452.1 | PF00046 | Homeobox | Homeodomain | short stature homeobox protein [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000005324.1 | PF00046 | Homeobox | Homeodomain | aristaless-related homeobox protein [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000005435.1 | PF00046 | Homeobox | Homeodomain | homeobox protein DLL-1 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000005567.1 | PF00046 | Homeobox | Homeodomain | transcription factor Dll [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000005768.1 | PF00046 | Homeobox | Homeodomain | LIM/homeobox protein Lhx5 isoform X1 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000007134.1 | PF00046 | Homeobox | Homeodomain | homeobox protein Meis1 isoform X2 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000010046.1 | PF00046 | Homeobox | Homeodomain | homeobox protein vab-15 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000010746.1 | PF00046 | Homeobox | Homeodomain | Jbrowse | |
| BRAKERKREP00000011005.1 | PF00046 | Homeobox | Homeodomain | retinal homeobox protein Rx-B-like isoform X1 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000011033.1 | PF00046 | Homeobox | Homeodomain | retinal homeobox protein Rx-B-like isoform X1 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000011074.1 | PF00046 | Homeobox | Homeodomain | homeobox protein SIX6 isoform X2 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000011140.1 | PF00046 | Homeobox | Homeodomain | paired box protein Pax-3-like [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000013204.1 | PF00046 | Homeobox | Homeodomain | homeobox protein orthopedia [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000013232.1 | PF00046 | Homeobox | Homeodomain | homeobox protein orthopedia [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000013281.1 | PF00046 | Homeobox | Homeodomain | homeobox protein ARX [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000013380.1 | PF00046 | Homeobox | Homeodomain | NK-2 class homeobox transcription factor [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000014037.1 | PF00046 | Homeobox | Homeodomain | uncharacterized protein LOC100203334 isoform X2 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000014285.1 | PF00046 | Homeobox | Homeodomain | homeobox protein pnx-like [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000015474.1 | PF00046 | Homeobox | Homeodomain | paired mesoderm homeobox protein 2 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000015509.1 | PF00046 | Homeobox | Homeodomain | homeobox protein OTX1 B [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000015538.1 | PF00046 | Homeobox | Homeodomain | paired mesoderm homeobox protein 2 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000016295.1 | PF00046 | Homeobox | Homeodomain | homeobox protein OTX2-like isoform X1 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000016347.1 | PF00046 | Homeobox | Homeodomain | uncharacterized protein LOC101239718 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000016349.1 | PF00046 | Homeobox | Homeodomain | uncharacterized protein LOC101239718 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000017130.1 | PF00046 | Homeobox | Homeodomain | diencephalon/mesencephalon homeobox protein 1-A isoform X2 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000018562.1 | PF00046 | Homeobox | Homeodomain | homeobox A1 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000018600.1 | PF00046 | Homeobox | Homeodomain | uncharacterized protein LOC100198319 isoform X1 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000018601.1 | PF00046 | Homeobox | Homeodomain | uncharacterized protein LOC100198319 isoform X1 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000018893.1 | PF00046 | Homeobox | Homeodomain | homeobox protein ceh-22 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000019545.1 | PF00046 | Homeobox | Homeodomain | homeobox protein ceh-9 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000019684.1 | PF00046 | Homeobox | Homeodomain | homeobox protein PKNOX2-like isoform X2 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000019976.1 | PF00046 | Homeobox | Homeodomain | iroquois-class homeodomain protein IRX-2 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000024310.1 | PF00046 | Homeobox | Homeodomain | cnox3, partial [Hydra viridissima] | Jbrowse |
| BRAKERKREP00000024993.1 | PF00046 | Homeobox | Homeodomain | homeobox protein SIX1 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000025238.1 | PF00046 | Homeobox | Homeodomain | homeobox protein 10 isoform X2 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000026425.1 | PF00046 | Homeobox | Homeodomain | visual system homeobox 2-like [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000026602.1 | PF00046 | Homeobox | Homeodomain | pituitary homeobox 1 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000026627.1 | PF00046 | Homeobox | Homeodomain | aristaless homeobox protein isoform X2 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000026628.1 | PF00046 | Homeobox | Homeodomain | homeobox protein aristaless isoform X1 [Hydra vulgaris] | Jbrowse |
| BRAKERKREP00000027736.1 | PF00046 | Homeobox | Homeodomain | homeobox protein Hox-C6 [Hydra vulgaris] | Jbrowse |
| g10100.t1.1 | PF00046 | Homeobox | Homeodomain | LIM/homeobox protein Lhx5 isoform X1 [Hydra vulgaris] | Jbrowse |
| g10447.t1.1 | PF00046 | Homeobox | Homeodomain | homeobox protein vab-15 [Hydra vulgaris] | Jbrowse |
| g10684.t1.1 | PF00046 | Homeobox | Homeodomain | diencephalon/mesencephalon homeobox protein 1 [Hydra vulgaris] | Jbrowse |
| g11111.t1.1 | PF00046 | Homeobox | Homeodomain | NK-2 class homeobox transcription factor [Hydra vulgaris] | Jbrowse |
| g11228.t1.1 | PF00046 | Homeobox | Homeodomain | diencephalon/mesencephalon homeobox protein 1-A isoform X2 [Hydra vulgaris] | Jbrowse |
| g11777.t1.1 | PF00046 | Homeobox | Homeodomain | retinal homeobox protein Rx-B-like isoform X1 [Hydra vulgaris] | Jbrowse |
| g120.t1.1 | PF00046 | Homeobox | Homeodomain | pre-B-cell leukemia transcription factor 1 [Hydra vulgaris] | Jbrowse |
| g1213.t1.1 | PF00046 | Homeobox | Homeodomain | homeobox protein Hox-C6 [Hydra vulgaris] | Jbrowse |
| g12161.t1.1 | PF00046 | Homeobox | Homeodomain | visual system homeobox 2-like [Hydra vulgaris] | Jbrowse |
| g12304.t1.1 | PF00046 | Homeobox | Homeodomain | transcription factor Dll [Hydra vulgaris] | Jbrowse |
| g12376.t1.1 | PF00046 | Homeobox | Homeodomain | homeobox protein DLL-1 [Hydra vulgaris] | Jbrowse |
| g12996.t1.1 | PF00046 | Homeobox | Homeodomain | homeobox protein 10 isoform X2 [Hydra vulgaris] | Jbrowse |
| g14834.t1.1 | PF00046 | Homeobox | Homeodomain | homeobox protein ceh-22 [Hydra vulgaris] | Jbrowse |
| g15721.t1.1 | PF00046 | Homeobox | Homeodomain | paired mesoderm homeobox protein 2 [Hydra vulgaris] | Jbrowse |
| g15749.t1.1 | PF00046 | Homeobox | Homeodomain | homeobox protein OTX1 B [Hydra vulgaris] | Jbrowse |
| g16206.t1.1 | PF00046 | Homeobox | Homeodomain | homeobox protein SIX6 isoform X2 [Hydra vulgaris] | Jbrowse |
| g16259.t1.1 | PF00046 | Homeobox | Homeodomain | paired box protein Pax-3-like [Hydra vulgaris] | Jbrowse |
| g16519.t1.1 | PF00046 | Homeobox | Homeodomain | homeobox protein PKNOX2-like isoform X2 [Hydra vulgaris] | Jbrowse |
| g17091.t1.1 | PF00046 | Homeobox | Homeodomain | POU domain, class 4, transcription factor 2 isoform X2 [Hydra vulgaris] | Jbrowse |
| g17148.t1.1 | PF00046 | Homeobox | Homeodomain | homeobox protein Hox-B10a-like [Hydra vulgaris] | Jbrowse |
| g17524.t1.1 | PF00046 | Homeobox | Homeodomain | homeobox protein ceh-9 [Hydra vulgaris] | Jbrowse |
| g18460.t1.1 | PF00046 | Homeobox | Homeodomain | homeobox protein pnx-like [Hydra vulgaris] | Jbrowse |
| g19001.t1.1 | PF00046 | Homeobox | Homeodomain | homeobox protein orthopedia [Hydra vulgaris] | Jbrowse |
| g19002.t1.1 | PF00046 | Homeobox | Homeodomain | homeobox protein ARX [Hydra vulgaris] | Jbrowse |
| g19133.t1.1 | PF00046 | Homeobox | Homeodomain | pituitary homeobox 1 [Hydra vulgaris] | Jbrowse |
| g19171.t1.1 | PF00046 | Homeobox | Homeodomain | homeobox protein aristaless isoform X1 [Hydra vulgaris] | Jbrowse |
| g19171.t2.1 | PF00046 | Homeobox | Homeodomain | aristaless homeobox protein isoform X2 [Hydra vulgaris] | Jbrowse |
| g225.t1.1 | PF00046 | Homeobox | Homeodomain | cnox-2 homeoprotein [Hydra viridissima] | Jbrowse |
| g22818.t1.1 | PF00046 | Homeobox | Homeodomain | uncharacterized protein LOC101239718 [Hydra vulgaris] | Jbrowse |
| g22820.t1.1 | PF00046 | Homeobox | Homeodomain | uncharacterized protein LOC101239718 [Hydra vulgaris] | Jbrowse |
| g25034.t1.1 | PF00046 | Homeobox | Homeodomain | aristaless-related homeobox protein [Hydra vulgaris] | Jbrowse |
| g25597.t1.1 | PF00046 | Homeobox | Homeodomain | short stature homeobox protein [Hydra vulgaris] | Jbrowse |
| g3610.t1.1 | PF00046 | Homeobox | Homeodomain | zinc metalloproteinase nas-15 [Hydra vulgaris] | Jbrowse |
| g3610.t2.1 | PF00046 | Homeobox | Homeodomain | zinc metalloproteinase nas-15 [Hydra vulgaris] | Jbrowse |
| g4316.t1.1 | PF00046 | Homeobox | Homeodomain | homeobox protein OTX2-like isoform X1 [Hydra vulgaris] | Jbrowse |
| g4665.t1.1 | PF00046 | Homeobox | Homeodomain | uncharacterized protein LOC124815092 [Hydra vulgaris] | Jbrowse |
| g563.t1.1 | PF00046 | Homeobox | Homeodomain | homeobox protein mab-5-like [Hydra vulgaris] | Jbrowse |
| g5978.t1.1 | PF00046 | Homeobox | Homeodomain | Jbrowse | |
| g737.t1.1 | PF00046 | Homeobox | Homeodomain | homeobox protein ceh-28 [Hydra vulgaris] | Jbrowse |
| g7663.t1.1 | PF00046 | Homeobox | Homeodomain | cnox3, partial [Hydra viridissima] | Jbrowse |
| g8004.t1.1 | PF00046 | Homeobox | Homeodomain | iroquois-class homeodomain protein IRX-2 [Hydra vulgaris] | Jbrowse |
| g8233.t1.1 | PF00046 | Homeobox | Homeodomain | uncharacterized protein LOC100203334 isoform X2 [Hydra vulgaris] | Jbrowse |
| g8477.t1.1 | PF00046 | Homeobox | Homeodomain | homeobox A1 [Hydra vulgaris] | Jbrowse |
| g8483.t1.1 | PF00046 | Homeobox | Homeodomain | uncharacterized protein LOC100198319 isoform X1 [Hydra vulgaris] | Jbrowse |
| g8483.t2.1 | PF00046 | Homeobox | Homeodomain | uncharacterized protein LOC100198319 isoform X1 [Hydra vulgaris] | Jbrowse |
| g9491.t1.1 | PF00046 | Homeobox | Homeodomain | homeobox protein SIX1 [Hydra vulgaris] | Jbrowse |
| g963.t1.1 | PF00046 | Homeobox | Homeodomain | homeobox protein Meis1 isoform X2 [Hydra vulgaris] | Jbrowse |
