Detailed information of 26250_t.1 in Hydra viridissima

Genomic Location: :...
NR annotation: XP_002156035.2, poly(U)-binding-splicing factor PUF60 isoform X4 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5R469Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii OX=9601 GN=PUF60 PE=2 SV=1
Q3UEB3Poly(U)-binding-splicing factor PUF60 OS=Mus musculus OX=10090 GN=Puf60 PE=1 SV=2
Q9WV25Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus OX=10116 GN=Puf60 PE=2 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00076RRM_1RNA recognition motifDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR051974FamilyPoly(U)-binding-splicing regulatorInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR034211DomainPUF60, RNA recognition motif 2Interproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR034209DomainPUF60, RNA recognition motif 1Interproscan
IPR034212DomainPUF60, RNA recognition motif 3Interproscan
IPR003954DomainRNA recognition motif domain, eukaryoteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47330POLY(U)-BINDING-SPLICING FACTOR PUF60-B-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000380Biological Processalternative mRNA splicing, via spliceosomeInterproscan
GO:0000381Biological Processregulation of alternative mRNA splicing, via spliceosomeInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0006376Biological ProcessmRNA splice site recognitionInterproscan
GO:0071011Cellular Componentprecatalytic spliceosomeInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12838PUF60; poly(U)-binding-splicing factor PUF60-Spliceosomeko03041deepkoala

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