Gene detail

Detailed information of 3261_t.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029196092.2, probable ATP-dependent RNA helicase DHX34 [Acropora millepora]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

3261_t

ATGGGAAGTTATTTCTTTCCGCAGTACTCATCAAGTGAGCGAGGCGATGTTCTTATGTTCCTGAGTGGCATGTCAGAAATCTCCGCAGTTGTTGACGCCGCAAGGGAGTATGCACAGCGGACTCGCCGGTGGATCATTTTGCCGCTTCATAGTTCGCTATCGGTGGAAGATCAGGACAAGGTATTTGATGTTTCTCCAGAAGGAGTGCGGAAATGTGTAGTGGCCACTAACATCGCTGAGACTTCCATCACAATTGATGGAATACGATTCATAGTTGACTCTGGAAAGGTTAAAGAGATGAGTTTTGATCCTGAGGCTAAAATGCAGCGACTCCGTGAATTCTGGATTAGCCAAGCAAGTTCTGAACAGCGAAAGGGGAGAGCAGGTCGCACGGGTCCTGGTGTGTGCTTTCGTTTGTATTCCGAGAGTGATTATCACGCCTTCTCACAGTACACCACTCCTGAGATACAACGCGTGCCTCTGGACTCTATTATCCTACAAATGGTTTCCCTGGGCGTTACTCACGTACGAGAGTTTCCGTTCATTGAACCACCCCCTGCCTCGAACGTTGAAAATTCAATCCACTTTCTCAAGCAACAAGGAGCGTTGACAGACAGTGAGAACTTGACTCCCATTGGCCAGATGCTGGCTCAACTGCCCGTCGATGTCGTCATTGGAAAGATGTTGCTGATTGGTTCAGTGTTTCACATGATTGAACCCGTGATGATTATTTCCACTGCTCTTAGTGTCCAGTCTCCTTTCACTCGAAGACTGGATCATGACCCAGATGTGACGTCACTGAGACAGCCCCTGGAATCTGATCATGGCGACCCCTTTACACTCCTGAACGCCTACGATGAATGGTTGCAGATCAAAAGCCGGGAAGGTTCTTCGCGAAAGTGGTGCAAAAGACGAGGTCTCGAAGAACAGCGATTCTACGAGATGTCGAAGCTCAAGCGACAATTCGAACAATTGCTGCAAGATCATCATTTGCTGGATCCCCAGGGACGGGACGAAGACGACGATGACTTCGAGCGGGACCGGGAGGAAGACAAAAGGCGCCAATTGAAGAAACTCAAACGAGAGCACCGAAAGTCATCAAGGAAAACTAAAATGTTGAAGTTGGACGAAGACCAGGGAACCGGAAGTGATGAAGAACAAGGCACGGACATCCGGGATCTTGAATTTAAACTGACTCATGACCTTGACAAGCTGCAGGCCGGAAGTGCGGTCAGACGCAGCTTTACCCTGCGGGAAATCAATCTGTTGAAGATAATTCTTTGTAGTGGTCTGTACCCTAATTTCGCCATCCCTGATGAGGGAAATACATGGAAAAGGGACTCGGAACAGTTATTTCACAGTCACTCGAAGCAGTTTCTTCTTATGCATCCTACGAGTGTTTTTGCCACTCGTCCAGAGCTGCTTCAGCCCGCAGACGCCCCTCATCAATCGTCATCATCAAAGTCCCAAACCGAGTACTCGAGCTGCCACCAGTTGCTGGCTTTTGTTTCCCTTTTAGAGACCAACAAACCCTATTTGGTGAATTCCATGCGAGTGCCAGCCGTTCAgactcttttcctttttgcgcAGAACCTGGATACCAATGCCGACCTAACACGCGTTATTGTTGATACTTGGCTTGAAATCTGTCTGCCTGACGGTGCAGCAGGACAGAGAGTGCTAGCCGCTGTTCAGCAGCTCCGTGCTACGTGGGCACGCTTGTTAAAGCTTCGATTCGATACCAGCAGGGTCAATGGCAGGCTGGAGGGCCGCAAGTCTGCAACTCGACAAAACAAAGAACGTGATCTCGAGCATGTTTTGGCGAAGAAATTGTCAGAATTTCTGGATAGCGATGTACGGTACTCGCTTCGACGCCTTTTGCCTTCAGAAAGCCAGCATCTTTACTTCGGTCCTAATGGTCAAATTTCTCGTGAGGACGAAACTGAGAGAGTGCTCACGTTTGCATTTGGCTGTAATCCACACCCAATTAAAGGGGGCTTTTGTGTGAATGAATACCTGACCTACAATTGTCTCCAAGACACTGTAATGGCGGAGGCAGCCTCCGCCGCTGCTCAGTTCATCACTAAGCATTGGCGCTGCGAGAGGTGCGGCGAAAAAATGTTGGTGACTGTTTTAGAAAGGTTACAGCATCAGGAAGAATGCCATCAAGATGAGCCTACCGTTACGAGAGAGACAGCGGCTGTTGAACTTGCGCAATCGCAGATTGCAGACAATACAGCCAAGGTCGATTCTTCTGTTGAACGGTTACGAAGGTCGTATTACTGCCGCATTTGTGAACAGGAATTTTCTCTCACCAGTACTGAGATTTTGAAGCATAAAAAGTCACATAACAAGGGATAA

Transcript

3261_t

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9DBV3	Probable ATP-dependent RNA helicase DHX34 OS=Mus musculus OX=10090 GN=Dhx34 PE=1 SV=2
Q14147	Probable ATP-dependent RNA helicase DHX34 OS=Homo sapiens OX=9606 GN=DHX34 PE=1 SV=2
F4I9Q5	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g58060 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004451 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21010 all species →	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan
PF07717 all species →	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	Domain	Interproscan
PF04408 all species →	HA2_N	Helicase associated domain (HA2), winged-helix	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007502 all species →	Domain	Helicase-associated domain	Interproscan
IPR011709 all species →	Domain	DEAD-box helicase, OB fold	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR048333 all species →	Domain	Helicase associated domain (HA2), winged-helix domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934 all species →	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000184 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0005622 all species →	Cellular Component	intracellular anatomical structure	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for 3261_t.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.