Gene detail

Detailed information of 4_ENSDKXP00000001310.1 in Aurelia sp. 4 Dawson et al 2005

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species abbreviation ASP3 · all data for this species · gene families

Sequence

No sequence record for 4_ENSDKXP00000001310.1 in ASP3 (the gene ID may belong to a different isoform naming scheme). Try the gene search.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05000 all species →	RNA_pol_Rpb1_4	RNA polymerase Rpb1, domain 4	Domain	Interproscan
PF00623 all species →	RNA_pol_Rpb1_2	RNA polymerase Rpb1, domain 2	Domain	Interproscan
PF04983 all species →	RNA_pol_Rpb1_3	RNA polymerase Rpb1, domain 3	Domain	Interproscan
PF04997 all species →	RNA_pol_Rpb1_1	RNA polymerase Rpb1, domain 1	Domain	Interproscan
PF04998 all species →	RNA_pol_Rpb1_5	RNA polymerase Rpb1, domain 5	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047107 all species →	Domain	DNA-directed RNA pol I, largest subunit, C-terminal domain	Interproscan
IPR007083 all species →	Domain	RNA polymerase Rpb1, domain 4	Interproscan
IPR044893 all species →	Homologous_superfamily	RNA polymerase Rpb1, clamp domain superfamily	Interproscan
IPR000722 all species →	Domain	RNA polymerase, alpha subunit	Interproscan
IPR042102 all species →	Homologous_superfamily	RNA polymerase Rpb1, domain 3 superfamily	Interproscan
IPR007066 all species →	Domain	RNA polymerase Rpb1, domain 3	Interproscan
IPR007080 all species →	Domain	RNA polymerase Rpb1, domain 1	Interproscan
IPR006592 all species →	Domain	RNA polymerase, N-terminal	Interproscan
IPR007081 all species →	Domain	RNA polymerase Rpb1, domain 5	Interproscan
IPR038120 all species →	Homologous_superfamily	RNA polymerase Rpb1, funnel domain superfamily	Interproscan
IPR015699 all species →	Domain	DNA-directed RNA pol I, largest subunit, N-terminal domain	Interproscan
IPR045867 all species →	Family	DNA-directed RNA polymerase, subunit beta-prime	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19376 all species →	DNA-DIRECTED RNA POLYMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0001054 all species →	Molecular Function	RNA polymerase I activity	Interproscan
GO:0005736 all species →	Cellular Component	RNA polymerase I complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for 4_ENSDKXP00000001310.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.