Detailed information of 4_ENSDKXP00000004021.1 in Aurelia sp. 4 Dawson et al 2005

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Aurelia sp. 4 Dawson et al 2005 · all data for this species · gene families

 Sequence
No sequence record for 4_ENSDKXP00000004021.1 in ASP3 (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00241
all species →		Cofilin_ADFCofilin/tropomyosin-type actin-binding proteinDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002108
all species →		DomainActin-depolymerising factor homology domainInterproscan
IPR029006
all species →		Homologous_superfamilyADF-H/Gelsolin-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10829
all species →		CORTACTIN AND DREBRINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003779
all species →		Molecular Functionactin bindingInterproscan
GO:0005884
all species →		Cellular Componentactin filamentInterproscan
GO:0014069
all species →		Cellular Componentpostsynaptic densityInterproscan
GO:0030027
all species →		Cellular ComponentlamellipodiumInterproscan
GO:0030425
all species →		Cellular ComponentdendriteInterproscan
GO:0030427
all species →		Cellular Componentsite of polarized growthInterproscan
GO:0030833
all species →		Biological Processregulation of actin filament polymerizationInterproscan
GO:0030864
all species →		Cellular Componentcortical actin cytoskeletonInterproscan
GO:0045211
all species →		Cellular Componentpostsynaptic membraneInterproscan
GO:0045773
all species →		Biological Processpositive regulation of axon extensionInterproscan
GO:0048812
all species →		Biological Processneuron projection morphogenesisInterproscan
GO:0051015
all species →		Molecular Functionactin filament bindingInterproscan
GO:0061003
all species →		Biological Processpositive regulation of dendritic spine morphogenesisInterproscan
GO:0098974
all species →		Biological Processpostsynaptic actin cytoskeleton organizationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for 4_ENSDKXP00000004021.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Aurelia sp. 4 Dawson et al 2005 tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Aurelia sp. 4 Dawson et al 2005, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.not in the sequence tableopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.not in the sequence tableopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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