Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Aurelia sp. 4 Dawson et al 2005 · all data for this species · gene families
4_ENSDKXP00000005742.1 in ASP3 (the gene ID may belong to a different isoform naming scheme). Try the gene search.| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01238 all species → | PMI_typeI_C | Phosphomannose isomerase type I C-terminal | Domain | Interproscan |
| PF20511 all species → | PMI_typeI_cat | Phosphomannose isomerase type I, catalytic domain | Domain | Interproscan |
| PF20512 all species → | PMI_typeI_hel | Phosphomannose isomerase type I, helical insertion domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016305 all species → | Family | Mannose-6-phosphate isomerase | Interproscan |
| IPR014710 all species → | Homologous_superfamily | RmlC-like jelly roll fold | Interproscan |
| IPR046456 all species → | Domain | Phosphomannose isomerase type I, C-terminal domain | Interproscan |
| IPR011051 all species → | Homologous_superfamily | RmlC-like cupin domain superfamily | Interproscan |
| IPR046457 all species → | Domain | Phosphomannose isomerase type I, catalytic domain | Interproscan |
| IPR046458 all species → | Domain | Phosphomannose isomerase type I, helical insertion domain | Interproscan |
| IPR018050 all species → | Conserved_site | Phosphomannose isomerase, type I, conserved site | Interproscan |
| IPR001250 all species → | Family | Mannose-6-phosphate isomerase, type I | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10309 all species → | MANNOSE-6-PHOSPHATE ISOMERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004476 all species → | Molecular Function | mannose-6-phosphate isomerase activity | Interproscan |
| GO:0009298 all species → | Biological Process | GDP-mannose biosynthetic process | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0005975 all species → | Biological Process | carbohydrate metabolic process | Interproscan |
4_ENSDKXP00000005742.1.Genes whose expression across the transcriptome samples of Aurelia sp. 4 Dawson et al 2005 tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Aurelia sp. 4 Dawson et al 2005, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
