Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Aurelia sp. 4 Dawson et al 2005 · all data for this species · gene families
4_ENSDKXP00000005850.1 in ASP3 (the gene ID may belong to a different isoform naming scheme). Try the gene search.| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14792 all species → | DNA_pol_B_palm | DNA polymerase beta palm | Domain | Interproscan |
| PF10391 all species → | DNA_pol_lambd_f | Fingers domain of DNA polymerase lambda | Domain | Interproscan |
| PF14791 all species → | DNA_pol_B_thumb | DNA polymerase beta thumb | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR022312 all species → | Family | DNA polymerase family X | Interproscan |
| IPR037160 all species → | Homologous_superfamily | DNA polymerase, thumb domain superfamily | Interproscan |
| IPR002054 all species → | Domain | DNA-directed DNA polymerase X | Interproscan |
| IPR002008 all species → | Family | DNA polymerase family X, beta-like | Interproscan |
| IPR019843 all species → | Binding_site | DNA polymerase family X, binding site | Interproscan |
| IPR028207 all species → | Domain | DNA polymerase beta, palm domain | Interproscan |
| IPR043519 all species → | Homologous_superfamily | Nucleotidyltransferase superfamily | Interproscan |
| IPR018944 all species → | Domain | DNA polymerase lambda, fingers domain | Interproscan |
| IPR029398 all species → | Domain | DNA polymerase beta, thumb domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11276 all species → | DNA POLYMERASE TYPE-X FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0003887 all species → | Molecular Function | DNA-directed DNA polymerase activity | Interproscan |
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| GO:0016779 all species → | Molecular Function | nucleotidyltransferase activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006303 all species → | Biological Process | double-strand break repair via nonhomologous end joining | Interproscan |
| GO:0034061 all species → | Molecular Function | DNA polymerase activity | Interproscan |
4_ENSDKXP00000005850.1.Genes whose expression across the transcriptome samples of Aurelia sp. 4 Dawson et al 2005 tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Aurelia sp. 4 Dawson et al 2005, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
