Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Aurelia sp. 4 Dawson et al 2005 · all data for this species · gene families
4_ENSDKXP00000005903.1 in ASP3 (the gene ID may belong to a different isoform naming scheme). Try the gene search.| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF19032 all species → | Intu_longin_2 | Intu longin-like domain 2 | Domain | Interproscan |
| PF19033 all species → | Intu_longin_3 | Intu longin-like domain 3 | Domain | Interproscan |
| PF19031 all species → | Intu_longin_1 | First Longin domain of INTU, CCZ1 and HPS4 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR043988 all species → | Domain | CCZ1/INTU, second Longin domain | Interproscan |
| IPR039151 all species → | Family | Protein inturned | Interproscan |
| IPR036034 all species → | Homologous_superfamily | PDZ superfamily | Interproscan |
| IPR001478 all species → | Domain | PDZ domain | Interproscan |
| IPR043989 all species → | Domain | CCZ1/INTU/HPS4, third Longin domain | Interproscan |
| IPR043987 all species → | Domain | CCZ1/INTU/HSP4, first Longin domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21082 all species → | PROTEIN INTURNED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016192 all species → | Biological Process | vesicle-mediated transport | Interproscan |
| GO:0001736 all species → | Biological Process | establishment of planar polarity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005929 all species → | Cellular Component | cilium | Interproscan |
| GO:0007399 all species → | Biological Process | nervous system development | Interproscan |
| GO:0060271 all species → | Biological Process | cilium assembly | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
4_ENSDKXP00000005903.1.Genes whose expression across the transcriptome samples of Aurelia sp. 4 Dawson et al 2005 tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Aurelia sp. 4 Dawson et al 2005, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
