Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Aurelia sp. 4 Dawson et al 2005 · all data for this species · gene families
4_ENSDKXP00000023835.1 in ASP3 (the gene ID may belong to a different isoform naming scheme). Try the gene search.| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05033 all species → | Pre-SET | Pre-SET motif | Family | Interproscan |
| PF01429 all species → | MBD | Methyl-CpG binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR051516 all species → | Family | Histone-lysine N-methyltransferase SETDB | Interproscan |
| IPR007728 all species → | Domain | Pre-SET domain | Interproscan |
| IPR001739 all species → | Domain | Methyl-CpG DNA binding | Interproscan |
| IPR046341 all species → | Homologous_superfamily | SET domain superfamily | Interproscan |
| IPR016177 all species → | Homologous_superfamily | DNA-binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46024 all species → | HISTONE-LYSINE N-METHYLTRANSFERASE EGGLESS | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0010629 all species → | Biological Process | negative regulation of gene expression | Interproscan |
| GO:0046974 all species → | Molecular Function | histone H3K9 methyltransferase activity | Interproscan |
| GO:0051567 all species → | Biological Process | obsolete histone H3-K9 methylation | Interproscan |
| GO:0070828 all species → | Biological Process | heterochromatin organization | Interproscan |
| GO:0090309 all species → | Biological Process | obsolete positive regulation of DNA methylation-dependent heterochromatin formation | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0042054 all species → | Molecular Function | histone methyltransferase activity | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
4_ENSDKXP00000023835.1.Genes whose expression across the transcriptome samples of Aurelia sp. 4 Dawson et al 2005 tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Aurelia sp. 4 Dawson et al 2005, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
