Gene detail

Detailed information of ANN00030-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:561044...566919
NR annotation: CAH3106007.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN00030-RA

ATGGAGCAGGCAAAGGCAGATGTACTGCGAAAAGGTCGCATGCATATTTCAAGTAATATGAATGCAGAAAAGGTTGTAGAGCGACTTTATTCTCAAGGGATTTTTGACATCGATGACCGCGAGTTAATACTCGCCGAAACGACGACTAATGGGAAAGGGTTGAAGCTGTTGGATTTGCTTCCTCGGCGGCGACCTGAGGCTTTTGATGCCTTCTTGCAAGCTCTGCGTGAATGTGGTTGTGGACATCTAGCGAATACCATTCAGTCAGAGACGCCAGCAGGTGCATATTCAGGAGCAAGCAATGAAAGGAAACCATCCTCTTTTGGCCTTCCTAAGAAGATTCCTAAGTTCATTGGAAGGGTTGAAGTCTGTGAGAAGATATCAAGTTTGTTGACTGCTGGAGGTGATGATAACACTAGCCTCATAACTCTGGTTGCTCCACCTGGTTTTGGTAAAACAGCTGTTGCAGTTAATATGGGCTACATTATGTTAGAAAAGGGAAAAGATGTGCTTTATGTCTCCCTTAGAACAGTGACGTCAGTGACCCTTGCAGCTAAGAATATGCTAGAGGCAATTGGCATTCCTGTAGGGGATACTCCTGTCTCACAATTGAAAAAATTCCTGACATCACTTCAACGGGACATGGTACTAATTTTGGATAATGCTGAAGACCTGCAAACAGGGGAGGAGGAACAATTTAATAATTTTCTGGAAGAAATTGGTCAACATGCAAGAAATCTTGTTACACTTATTACAACCAGGATTCCATTGTCAAAGCTGGATTTCCCTTTCATAACCGATCACATTGCACTAAAACCCTTAGACGAGGCAGAGTCATTTGCCTTTCTCAAGAGTCAAGCCCCTGATATTCCAGACCAACAAGCCAGGAGATTTGCATGGCCAAGGGCCTGTGGTGGTATCCCCTTGTTGCTCAAATTAACAGCATCATATTTGAAGAGCAAAACAGTTGATCCAACAGACCTTCACAGAAAGCTCCAAAACTGTCCACATAGTTTTCTCAAGGGAAAGGATCCAAAAGTCGAAGAGCTTTTTCTTCTTCTAAAAGTGTTCTACAACCATCTGCGGCCAGAAGTGAAGAAGGCTCTTACCTATCTGGCTGCGTTTCCGACGATTTTTACAAAAAAAGAAGCGAATGATGTCCTGTTTCCCAGTGAGGATTGCCTGGAGTTTCAGATCTTACTTAACAATCTTGAATCTCATTCACTTGTTCAACGAGATGGAGACAATAATGCAGAGGCACAGTACAGCCTGCATCCATTAATTCAAGCTTTCTGCAAGGCATGCAGTGACAATGCATGCAAAGGATACAACACAGCAATGACACTATTTTCCCACCATTATCTGTCACTTCTTCAACAACTGAATGATGGTTTTATCACCACAAACTGTAAGCCTGCCATAGACAAGTATCACATCAACAAAGTGAACATCCGCCATGCCCTTGCAGCATCAGCAGACAGCGATGAAGATTTGAAATGTTATGGACTTGGAGTCTCAACAGAGACTTTAGGCTTCCTTGCTAAAGTCATGAACAAGGATGAATTCATGTCCTCATATAGCAAGTTTCTAGAGATATCAAGAAAACTGCCGGACAAAACTTTGTACAGCCAGTGTCTTGTATCCATTGGATTTCAACAGATTTGTTACCATGGCTACAAGGATGCGTGCCGTACAAGTGCTAAAAAGAGCCTTCAAGAAGCACATGATCTCCAGCATCAACTAGGGATTAATGACACAGAATGTTTGGGACATTGCAAATGCAAGCTGGGGCTTTGCACAGTTGCTTCTGGAAATACCAAGGAGGGCATCTCACTCATTGCACAAGGCATTGGTATACGTAAGAGACTGGTGTGCACTGAAGGCTCAGGGAAGATGGAACGCATGTGTGTGGGTGGTGGATTTTGTGACCTTGGAATGGCCATGTTTACCAGTGGTCAATACAGAGCAGCTGTCAACATCTGGGAGAATATCTGCTTAGTCAGGTACCGCGAGCTGTTAGGCAGACACCCCTTTACTGCTTCACTACTGGACTACATTGCAAATGGTTATGGGAAGCTGGGTTATCTTCGACGAGCTGCTTCGTTCAAGAGAGAGTCCCTGTCAATGAGACGTTTTCTGTTTGGAGAAGATCACCGGGACACGGCCAGAGCTTATTATGGTTTGGGCTCTGCTCTTGGTGCTCTGGAATCCACTGATGAAGCCCTGGATAATTTGAAGAAAGCTCGCAGCATTCAAATTCGTATTGTTGCCTCTGAACATGATATTGAGAAAACTGACAAAGAAATCAATTCTCTGGAAGGAAGATTGAGGACAGGATCTCCCTCCCAAATGCTACAAGGGATGCACATTGAAAACTATAGCGTAACAAATCAT

Transcript

ANN00030-RA

Protein

Uniprot

Uniprot term	Description
P42575	Caspase-2 OS=Homo sapiens OX=9606 GN=CASP2 PE=1 SV=2
P29594	Caspase-2 OS=Mus musculus OX=10090 GN=Casp2 PE=1 SV=5
P55215	Caspase-2 OS=Rattus norvegicus OX=10116 GN=Casp2 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00619	CARD	Caspase recruitment domain	Domain	Interproscan
PF13401	AAA_22	AAA domain	Domain	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001315	Domain	CARD domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR049945	Domain	ORC1/DEAH AAA+ ATPase domain	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47691	REGULATOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan