Gene detail

Detailed information of ANN00133-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:2201191...2216816
NR annotation: CAH3014638.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN00133-RA

ATGTATCAAAGTCGACATACTACACCGCATCAACCTTCCGGCCAACCTTTTAAATTCACTGTGGCGGACTCATGCGATCGTATCAAGGAGGAATTTAACTTTCTCCAAGCTCAGTACCACAGCTTGAAGTTAGAGTGTGAAAAGCTAGCAAGTGAGAAGACAGAAATGCAACGACATTATGTAATGAAAGCAGAAGCTATTGAACCAGTCAACGTTTCCATTGTTTACCTTTTTGTGACGTTCGAGGTTTTGGTCTCAAGATGTGAATACCAAGTATTCGTTTATACGCCCGATAAGTACTATGAAATGTCATATGGGCTAAACGTGGAAATGCATAAACAGACTGAGATTGCAAAGAGATTAAATGCGATCTGTGCACAAATCATCCCCTTCCTCTCTCAAGATCATCAACAGCAAGTCGCCGCAGCTGTAGAAAGAGCCAAACAAGTCACTATGACCGAATTAAATGCTATAATTGGGCAACAGCAACTTCATCAGCAAGGCCTTCAAGGTTTACATGCTCACCCACCCACAATACCACTGCCACACCCTGGAGCGACACCCCCACAACTACCACCAGGTGCAACATCAGGACTGCTTGCCTTGGGTAACTTGACTGTTCAACCTCCACATCTACCCATGATGAAACCAGAAGAAAAAGATGCTATGAACTCATTATCACCTCTTGGGCCAATGAGAGAAAAATACCGAGCCTCTGACCTGTCATCCCATGGAAGTGACGACGGACATGTGGACACACAGAGGGAAAGAGACAGAGATCGTGACAGGGAGAGAGAGAGGGAGAGGGAAAGGGAACGTGAACGAGAGAGGGACCGCGACAGGGACAGGGATCGAGATCGTGACAGAGAAAGGCATGTGAATGGTGAGTATGAGGCCTGGGATGCTGGATACATATCACACTCAGGAACAAAGAGCAACAGCAAAAGAAAGAGAGATGACAAAGATTCTGGGGAAAGTGATGCAGAAAAAAGTGATGGTGACTTGGTCGTGGATGTCTCAAATGAGGATGCCAGTTCACCAGCCAGAGTTGAGAATGGACCTGACTCACCCCCTTTAAATGAAAAGAAAGTTCGAAAGGATTCTGGATCTCCCACCAACCCCTCGTCATCGTCATCCACACCATCATCAAAACATCCCAAGCCAGATAGCAAACCTGCACTTTCATCATCAGAGGGCAGTTCCTCAGGAAGAAAAAGCCCATCAAGATCATCGCCATCTGTAAAAACACCAGTTGCGGCACCAGCTGTGAGAACAGCCATGTCTGTACCAGGAGGACCATATCCATTTGTCAATCCTCACAACATTGCAAGTGAACTATCCAGTCCGACATCATTTTCACCATCCGTGATGGCAGCCAGCATGTCTGCAAGTGGAATCGGCTATGGCAGATCTCCCCTGGTTGGCTTTGAACATGGTAGTCCAGCAACAAGAGTCGGCATGTCTCCATTAGGACCTAACCTCCCACCAGGTCCCCCTGGTGGTAAACCTGCATACTCGTTCTACGTCAGCGGAGATGGTCAGATGCAGCCAGTCCCATTCCCACCAGATGCTCTTCTTGGTTCCAACATTCCGCGGCATGCTAGACAGATCAACCAGCTGAATCATGGAGAGGTTGTGTGCGCTGTGACAATAAGTCATCCTACAAGACATGTCTACACTGGAGGAAAGGGTTGTGTCAAAGTGTGGGATATCGGACAAAGTAGTGGAAAAAATCCAATTTCAACATTAGAGTGTTTGAGAGATAATTACATCCGATCTTGCCGTCTGCTTCCTGATGGAAGAACATTAATAGTTGGTGGTGAAGCTAGTACTCTTACAATTTGGGATCTCGCATCATCACAACCAAGAATAAAGAATGAACTTACTTCAAATGCGCCGGCCTGTTATGCGCTGGCGATAAGCCCTGACTCCAAACTCCCAGAATTGCCACCAGTGAGGCCGCAGGTTAAAGGTCTACCCGTGAGATTCGTGCTAGCGTCCAAATTCCCTTTCACGGGCTCTAAAAGGGCTCCGTTTTGGAGCGATTCTGACTATCTTCGCTTCGCCATTATGCGCGCTCCCAACGGCTGTCCTACGAAATTCGAACACTCAAGCTTAGCAACCGCGTCACAGAGACAAAATGGCATTCACCCGAGGGGAGGGTCGTTACTTCTGCCCTCGTGCAAATTGACACCGTCGGGGAGCCGTGAATGTTTCAAAGGTTGTCGCTTTCCGATGAACGCGAATTTGACCGAAGAACAGGAGGAAATTTTTCAGTTTGCCAGGAATGGACATAATATATTGATTACAGGTCAAGCGGGAACCGGCAAATCATGGGTGGTTAACTGCATCAGAGACGATTGCAAGCAGCGTGGCAGGAAAGTGGCTTTAATTTGCTCGAGTGGTGTCGCCTGCCAGGTTTATGAACGTGGTGTGGCTTCAACTGTTCACTCGTACTATGGTCTTGGCGCAGCGGACATGCCATCAGATATGCTTATAGCTCGCGCTATTAGTGATGTTCGAGTCGTTGAGAAGTTGCAGAGTGTTGACGTTATTATCTGGGATGAGGCAAGTATGTCTAGTGCACGAATGCTGGAGCTCGCAAATGCCGCACATCACGCAACTTTTGAAGGATGTAATTTTCCGTTCGCTGGTACACAAATGATCGTAGTTGGCGAGTTCCTGCAATTGCGGCCAGTGCCAAATATTTTTGATGCCGGTGAACTGATGTTTCTTTCTAATGTCTTTAAACATGCAATACCGCACCGATTCCAGCTTACCAAATTGTTGCGACAGTCGGAAGGCAACAGCAGTTTTTTAAAGGCGTTGGCAGATGTTCGCTATGGGCAATGTACGAGTGAATCGGCTCTTTACTTTGGTGTAGCTTTAACAAGTGACGACACTCCGGGCACTTTGAATCTGGAGGGGAGAACACTTTACATTTTAAAGAGTAAGCCTTTGATTCTTCTTCGGCTGTGGTTCCTTGTTCCAAATCTCTGA

Transcript

ANN00133-RA

Protein

Uniprot

Gene family

Uniprot term	Description
Q62440	Transducin-like enhancer protein 1 OS=Mus musculus OX=10090 GN=Tle1 PE=1 SV=2
Q04724	Transducin-like enhancer protein 1 OS=Homo sapiens OX=9606 GN=TLE1 PE=1 SV=2
Q9JIT3	Transducin-like enhancer protein 3 OS=Rattus norvegicus OX=10116 GN=Tle3 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05970	PIF1	PIF1-like helicase	Family	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF03920	TLE_N	Groucho/TLE N-terminal Q-rich domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR010285	Family	DNA helicase Pif1-like	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005617	Domain	Groucho/TLE, N-terminal Q-rich domain	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR009146	Family	Groucho/transducin-like enhancer	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10814	TRANSDUCIN-LIKE ENHANCER PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000723	Biological Process	telomere maintenance	Interproscan
GO:0003678	Molecular Function	DNA helicase activity	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005667	Cellular Component	transcription regulator complex	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0090090	Biological Process	negative regulation of canonical Wnt signaling pathway	Interproscan