Gene detail

Detailed information of ANN00263-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:4119096...4154374
NR annotation: CAH3109664.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN00263-RA

ATGGCGGATAATGAATCAGATAGCGACGAAGACGTCGATATCCTTTCAAGTGTAGACGAAGGAAGGGGTCCTGTTATGTTTGGAGAGCATTTTTCCCACCATTTTCGACCATCAGCCATTTCCCTTGGCCACATCGGAAGCCTTCATGGATCCACGGGCTTTTCCTTCCCGGAGCAACAACACGTAGCGAGACAGGACAGTGAGTCAGGATCTGAAGGCTCCAGTAGCAGTCAGTCTGATTCAGAGTCTGATGACGATGGCAATGAGCAGCCTCAGCTGCAGCAGAAACAGCCTCCTCCTTTGTCGCATTACTACCCAGCCATGCAGATGTCATCACCTCCTGGACACCTCCAACACACGTTTAACAACAATCCCACTACGCCAACACAGAAGAAGAAGTTTGACGAGAGGTTTTGGGAAGAAGATCCAGAAACATATGGTGTAAGAAGATCGGGACGATCAAGGAAAGAACCAGAGAGATTTAATGTGCTACAAGAGGGATCAGGAAGTGAAGATGGGGAGAAACATGGAGGAATTCAAAGGAAAAAGAAAGGAAACTTGAAAGGAAGGCAAACCAGAAGAATTTCATCCACAAGCGAAGACTGGTCAGCAGTAGATGGTGACCACGGCAGTGAGAGTGACAGCAGTGATAACTACATGCCTGAACATGAGGTGCGGAACAGACCTAGACCTGTGCCACGTGCTAATGCAAGGGTACCACCTGTTGTACCAAAACCGAAAGATCCTATCCCTCGTAAAAAAACTCTGGCTCCCTCACCACAGAAAGTGTCTAGCAGAGTGAAGAAGTTAGAGAGCGAAGAATCCGATGATGATGATGATGATGATGATGATGATGATGATGACGATGATGATGACGATGATGAAAATAGCAGGAACTCTGTCAGAAGGGCCACAGTTAACATTTCAAGTTATAAAGAGGAGAGTGAAGATGGAACAGACTCAGATGAACTCATAGAGCAAAGTCAAGACGCAACAGGAGATTATGTGGAAGACGACAGGGAATGTATCGAGAAAGTACTGTACAGCCGCATAGGTCGACCAGGGGAGATTGGGGCGATAACAACAATCTACGCACCAGATTACGAGGAAATGATGAAGAGGGGGGAGCCTCTACCTGGTGAACCAAGTGAAGTGCAATACCTGATCAAGTGGAAAGGGTGGTCTCATCTTCATAATACATGGGAAACAGAAAACAGTCTGATCGAGCAGAATGTAAAGGGGATGAAAAAGCTCAGTAACTGTATGAAACGGGAGCAGGACATAGCAACATGGAAAAAGTTTGCCCTACCAGAAGACATTGAGTATTTCAACATTCAGTTAGAAATGAATTATGATCTTTTTGATGAATACAAAGAAGTGGAGAGAATTATTGCTCATACCATGGTTAAAAACCTGGATGAGAAAGGGAACACTGTCAATCAAGTGGACTACTTATGCAAGTGGCAGGGGTTGCCATATGGTGAGTGTACATGGGAGGATGGAGGACTCATCTCCAGGTTTCATCAGCAGAAAATTGACGCCTATCTCAAACGACAACAGTCAGAAAGAATTCCACCAAGAAGTGCAAAGGTTCACCGGCAACGACCAAGATTTGTTCCTATAAAGAAACAGCCATCCTTTATTGGTGCTGAAGACCTCATACTGAGGGACTACCAACTGGATGGACTGAATTGGCTTGTTAACTCTTGGTGCAAGGGACATTCAGTCATTCTTGCCGATGAAATGGGTCTTGGGAAAACAATTCAAGTTATCTCTTTTCTGTCGTATTTGTATAATGCCCAGTCTCTTTATGGGCCTTTCTTGTTGGTTGTACCACTGTCGACAATGGCTGCTTGGCAGAGAGAGTTCAGTCTGTGGAGCAAGGAAATTAATGTTGTGGTTTATCTTGGAGATGTAACAAGTCGAAACAAGATTCGGGAATTTGAATGGTATCGTTCCAACAGCAAGTCTATAAAATTCAACGCACTTCTGACAACTTATGAAATCTTACTAAAAGACAAGCTTACCTTAGGAACTGTCAACTGGTGCTGTCTTGTGGTGGACGAAGCTCACAGGCTGAAGAATGATGACTCCCTGCTGTACAAAGCTCTTACGGATTTCAACACCAACCACAGGGTGCTAATAACAGGAACACCCCTGCAGAATTCACTGAAAGAACTATGGGCATTGTTACATTTTATCATGCCTGACAGGTTTGATTCGTGGGACCTGTTTGAAAAGGCCCATGCTACCCAAGAGGAGAAAGATAAAGGATTTTCTACACTCCACAAGGAACTTGAGCCTTTTCTTTTAAGAAGAGTCAAGAAAGATGTTGAGAAGTCCTTGCCGGCTAAGGTGGAACAGATTCTTAGAGTGGAAATGTCATCAATTCAGAAACAGTATTATAGATGGATCCTCACAAAAAACTTTGCAGCTTTAAACAAAGGTTTAAAAGGAAACACAAACAGCTTCCTGAACATTGTGATGGAGCTGAAGAAATGTTGTAACCATGCTCAGCTGATCAGACCTGACAACTACCAAACAACTACAGACCCACTACAGAACCTTATCAGAGGGAGTGGCAAGCTGTTCCTGCTGGATAAGTTACTATGCAGATTAAAGGAAACTGGCCACAGGGTTCTTATCTTTTCACAGATGGTTCGAATGCTGGACATCTTAGCAGAGTATCTCCAGCTACGTCGCTTCCAATTTCAAAGATTGGATGGCTCCATTAAAGGAGACTTGAGAAAACAGGCTTTGGACCACTTCAATGCTGAAGGTTCTGAGGACTTCTGTTTCCTGTTATCTACTCGTGCTGGTGGCCTGGGTATTAATCTGGCTACAGCTGACACAGTGATCATATTCGACTCGGACTGGAATCCCCAGAATGACTTGCAAGCACAGGCTCGCGCTCACAGAATAGGACAGAGGAATCAGGTAAATATTTATCGACTTGTGTCTAAAGGCAGCATCGAAGAGGACATATTAGAACGAGCAAAGCGCAAGATGGTGCTTGATCATCTCATTATCCAGAGAATGGACACAACTGGTCGCAAGGTGTTGTCCAAGTCATCAGCAGCTCCCTCATCGAGCAACCCTTTTAACAAAGAGGAACTTGCAGCAATCTTAAAATTTGGAGCTGAAGAGCTTTTCAAGGAGGGTGATGGTGAAGACACTCAGCTGCAGGAAATGGACATTGATGACATATTGCGAGGAGCTGAAACAAGAGAATCTGATGATCACCCACAGACGATTGGGGAAGAACTTCTCTCTCAGTTCAAGGTTGCTAGTATCACAATGGATGCTGATGAAGATGAGGTAAATATTGTGGATCAAGAGATTAAACCCAAAGATGAAGAGAAAAGCTGGACAGACATCATCCCTGAATCAGAGAGGCGGAAACTTGAGGAAGAGGAGGAGCAAAAGAAACAACTAGAGCTGTATTTACCAAAGCGAAATAGGAAAACTGTGAAAAAGATGAATTACGGCAAAGCTGCCAACAGTGACAGCGAACAGGAAGAAAACCACTCAAAGAAAGGAAGAAGTCGAAAGAAGAAATCTGAGTCAGATAGTGATGAAGATTCTGGAGCAGAAGGCAAGGAAACAAAGAGAAAACGAGGAAGGCCACGAACCATCAAGAGGGAAGATGTGGATGGATTCAACGATGCTGAGATAAGAAGGTTTGTCAAAGGTTACAAGAAGTTTGGGAGACCAAGATCAAGGCTTGATGCAATTGCTGCTGATGCTGAACTGGAAGATAAATCCACTGAGGATCTTTCCAGACTGGCAGATATTCTTCACAACAGTTGTGTGAAAGCTGTGGCAGAGTATGAAGACAAACTAAAGGAGGATCCCAACTTTGATGGTAAAAAGCGCGGAGCCACTGTACGACTCAGCAATGTGACAGTAAATGCACCATCGGTGTTAAAACATGAAGAAGAACTTGAATGTGTTGCTGCCATTATGCCAGATGACCATGAAGCCAGGAGAAAATTTCGCTTGATGGCACCTGCCAAGAGTGTCCACTGGGGGGTAGCCTGGGACATTCCTGATGATTCAATGTTACTGGTTGGTATCTATGAGTGTGGATTAGGCAACTGGGAAGCCATCAAGGCTGATCAGACTCTGTCGCTGTCTTCTAAGATCCTGCCTCCTGGAAATTTAAAGCCACAAGACAAGCATTTGCAAACAAGAGTGGAATACCTGATAAAACTGCTAAAACAAGCTGAACTGGAGGACAAGGCAGAACAGCTAAGAAAGTCGTCGCAAATGCTCAAGTCAAAAATACGCCAACTGAAACGGAAAGAATCTAAAAAGGGAAAGTCACACTCAGACGTGGAATCACTCAACAACAGTGCTGCACCGTCACCTATGGAGGTGTTGTCCCCCCCTGATGGAGCAGAAAATAAAGAAGATGGAGTCACTCTTGAAACAAGTCAGGAGGGGCAGGTAGTACCAGAAGTGAAAAAGAAAAGAAAGGTTTCCAAAAAGAAGGAGAATGGCAAAGAAGAGGGAGAGAAGCCCAAACGACAAAAGAAAGAGAAAAAGGAAGTGTCCAAAGAAAAGAAGCAGGATGTGAAAGAAGCTCTGGTTCATGAAGAGCCTGCCTCACCTGCAAAAGAAGACATCAGCAAAACATCTAAAGAAGAAGGCAAGCCTCGGGGCTCCTATGCACTGGCAGACATGGACAAGGCTACATTTGATGAGTGTAAAGAAAAGATGCGTCCAGTGAAACGAGCGCTAAAAATGCTGGAGAGCCCTGAAGACATGAACGAAACCGATCAAGTGGCGCAGACGAGACAGTGCTTGTTAAAGATTGGAGATCACATCATGGACATCACGTCTCACTACAGTGACGGCGATGGCGAAGCATTATGGAGAAATAACCTTTGGACGTTTGTGTCCAAATTCACGTCGTTTGAAGCTAAGAAGCTGTTTAAGCTGTACAAGCATGCGGCCAAGAAAAGAGAAGAATCGAAATCCCAGGAGCGTAACCCTACCACGTGGTTACCTTATCTCAATATACAACTGTACCAGCAGGAAACGCAGTCCCCGAGAAATTACACCTTTTATACTCGTAGCCCTTTTGGAGTTAACTCATTTGACTTGTTACAGCGTGCTCAGCACAAGCCGTCCGTTCAACAACAGCGCTCCCATCAAGACTCCAAGAAACACACAGGAGACCATGCCCCCCAGCGGTCCAGTGACCTCAAAAGACCACTGGACGGAGGGGGGCCTGGAGGCAAGATTCCCCGGATGGACCGTACGTATTCAGGCTCTAGTTCTCATAGCGGCGGAAGGCATTCTGGGAGCGGAGACAGCTACGATCCTCGGCGCTCTTCATCGTTCACTCACTCCGACAGGGCTGGGAGCTCCTCCAAGGACAGATCACGTGACGGACACGACCACAGTCACAGATACCACGACTCACATCGCGACAGATCGTCGTACCATTCCTCCGACTACTCCCGACCTCACGACCGCTCTTCGGATCATAGTCGCCCCCACGACCAACACTCGCGATCCTACGAGAGGAGCTCCGACCATCACTCGCGCTCTTACGAGAAGAAAGATCGAAGAGACGACCATCACCGAGGTAGCTCTCGTGATTACTCGTCTGAAAGTCGGCATCACTCGCACCGTGATCGAAACAGCGATTCGGCTTCGCGACACAGTAATCCAACGGGCTCACCCAAGTCTGGTTCTTCGCACGAGAGTAAAAGATACGGAGAAGAAAAGCGGAGCTCGGAGACTGATCGCGAGAAGAGATGA

Transcript

ANN00263-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O14646	Chromodomain-helicase-DNA-binding protein 1 OS=Homo sapiens OX=9606 GN=CHD1 PE=1 SV=2
P40201	Chromodomain-helicase-DNA-binding protein 1 OS=Mus musculus OX=10090 GN=Chd1 PE=1 SV=3
B6ZLK2	Chromodomain-helicase-DNA-binding protein 1 OS=Gallus gallus OX=9031 GN=CHD1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003472 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18375 all species →	CDH1_2_SANT_HL1	CDH1/2 SANT-Helical linker 1	Domain	Interproscan
PF13907 all species →	CHD1-like_C	Chromodomain-helicase-DNA-binding protein 1-like, C-terminal	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00385 all species →	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000953 all species →	Domain	Chromo/chromo shadow domain	Interproscan
IPR040793 all species →	Domain	CDH1/2, SANT-Helical linker 1	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR038718 all species →	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR016197 all species →	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR023779 all species →	Conserved_site	Chromo domain, conserved site	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR025260 all species →	Domain	Chromodomain-helicase-DNA-binding protein 1-like, C-terminal domain	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan
IPR023780 all species →	Domain	Chromo domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45623 all species →	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0034728 all species →	Biological Process	nucleosome organization	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN00263-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.