Detailed information of ANN00293-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:4794450...4802245
NR annotation: CAH3109594.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7YTC2Homeobox protein orthopedia OS=Saccoglossus kowalevskii OX=10224 GN=otp PE=2 SV=1
Q6SZ65Homeobox protein orthopedia OS=Lytechinus variegatus OX=7654 GN=Otp PE=2 SV=1
Q6SR69Homeobox protein orthopedia OS=Heliocidaris erythrogramma OX=7634 GN=Otp PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007197 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03826
all species →		OAROAR motifMotifInterproscan
PF00046
all species →		HomeodomainHomeodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR001356
all species →		DomainHomeobox domainInterproscan
IPR003654
all species →		DomainOAR domainInterproscan
IPR017970
all species →		Conserved_siteHomeobox, conserved siteInterproscan
IPR000047
all species →		Conserved_siteHelix-turn-helix motifInterproscan
IPR051895
all species →		FamilyOrthopedia HomeoboxInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46770
all species →		HOMEOBOX PROTEIN ORTHOPEDIAInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0030182
all species →		Biological Processneuron differentiationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN00293-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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