Gene detail

Detailed information of ANN00557-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:10042114...10047661
NR annotation: CAB4027205.1, Hypothetical predicted protein [Paramuricea clavata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN00557-RA

ATGAGGCCCATATCCATTCTGCCAGTACTATCGAAAGTATTCGAAAGACTTGTCCATCAACAGGTTTTGTCTTTTATTGATTCACATAACTTGCTTAAAGATAACATATCAAGCTTTAGGAAAGGCCACTCGACAACCACTGTACTTTTAAGGATAAAAGACGACATCATCAAAGCCATGAAAAGGGGAGAGATTACACTTATGGTCCTTGCCGACTTTTCAAAAGCATTTGACACCATCAAATATAAAACTGTCCTGAAGAAGCTCGATTATCTTGGGTTTTCAAAATCTTTTCTTAACTGGACCATCGAATACTTAACTGACAGGCGGCATTTTGTCCAAATAGACGATAAAACATCTGACCGCAGTAGAGTTAACTTTGGAGTGCCACAAGGATCGATTATGGGACCTCTAATATTCAACCTCTACGTCGCAGATCTTCATGCCCACGTTAACATGCAATGTCACCAATACGCGGATAATACAACATTGTATGTGCACTGCAAGCCATCAAACCTCGAAAGTTGTAAACGTGACTTAAGCAAAAACTTATGTAATCTTGAGGAGTGGTCTAGAAATGCAAATTTAGTAATTAATCCATCAAAAACCAAAATGATGGTCTTGTCTACAAAACAATTGTCATCTGCCCGTGCCTTGGAAGACTTAAATATGAAGATCGCAGTAAATAACGAGAACATTGAACGTGTTCCTAGTACTAAACTCTTGGGAACGTACATTAATCAACATCTGAAATGGGAAGACAATGTTAAGTACATTTGTACCTCTTGCTACGCCACACTAGCAATGCTTCGGAAGGTCAAAAATCTGCTGCCTTTTCATATTAGGAAGAACCTTGCCCAAGCACTTGTTCTATCTAAATTATATTATAATGACATTCTTTATCACTCGCTACCGGAATATTTAACAGCACGTCTTCATAGAGTACAAAAGGCAACTGCAAGCTTTGTCAATGTAACTCAGGGATACTCGGAAAACGAGACATGTGGCAATCGAAAGCCGGGGCCTATGATTCAAACAAGGAATGCCACTTGCTTTGCGCGCGCTATAGAAGCACACGCATTCGCTTACCGTTTACATCACAATGATTTTCATAGTAACAGTAGGCATAAACAGTTTTGTTACGAGACTCCAAAACCGTTTTCACACGATTGTGTTACACTGAAAAAGGAACTGTGTTATATTCATAAAAGCAATATGTCGAGCGACAGAGAAACGTATCAAGATGGCAAGAAAAAAGAAGTTCTAACTGATGAGTTCTTTTTTGCGCTTTCCAACGCAATCAACTCTGGAAAATTTTGGCGTTGTATCAGATGGTGCGACGGAGGAAGTACGGTGTTAATCACAAGTCCAGTACTTTTTGAAAGAGATGTTCTGCAGAGGGAGCAATCGAAATTGCAACTGAAGGTGAATGATTTTGCTAGTTTTACTGATTTGCTCAAGCAAGTGGGTTTTGAAAAGGTTCTGAGTCAAAGGCCGTCCAAGGTGCAAAAATTTCGGCATCGCGACTTCACGAAAAACTACAGAGGTTTCCAACATGTGGTTAAGGAGACAGCTGAACCAAATGGAAAGAGAAAATTGTCAACGGAAGAAATTCTTGAGCTCGGTACAACAGGTTCAGTGAAGGCCGAAAAGAATCAAGAAGCAAATCTGGCGCAGTTAGTAAAGCGGCAAAGAAAAGTGACTTTTGAGGATGAAAGCGCGAGGATGGCTAAGAAGAGAAAGAGAAACTGTACAAATGGCGAAGAAATGTCTACGCACGGCAAGAAAAGAAAGATCGCTGTCCCAGTCATCCCGAGTGCTTCAATCACGCACGATACATTCAGCAAACAAATGCGCAGAATCTACAGCGCAGAAGAAATGACCGCTGCCCAGGCATTGCTCAGTTTATCAACACCAGTTGTGTTTGCGAATTACACGGCTATGGAACTAATGGCAGCTCAAAGCCTGGTTACTTTGTCAAGATCTTGTATTGTATCGCAGGAAAGAAGTGTTCGAGAATTGGAGGCGGCGTACGCCTTATTGGAACTTGCCAGCTCAGCCTGA

Transcript

ANN00557-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q95SX7	Probable RNA-directed DNA polymerase from transposon BS OS=Drosophila melanogaster OX=7227 GN=RTase PE=2 SV=1
Q9NBX4	Probable RNA-directed DNA polymerase from transposon X-element OS=Drosophila melanogaster OX=7227 GN=X-elementORF2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000187 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00447 all species →	HSF_DNA-bind	HSF-type DNA-binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR000232 all species →	Domain	Heat shock factor (HSF)-type, DNA-binding	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33332 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN00557-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.