Gene detail

Detailed information of ANN00557-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:10042114...10047661
NR annotation: CAB4027205.1, Hypothetical predicted protein [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN00557-RA

ATGAGGCCCATATCCATTCTGCCAGTACTATCGAAAGTATTCGAAAGACTTGTCCATCAACAGGTTTTGTCTTTTATTGATTCACATAACTTGCTTAAAGATAACATATCAAGCTTTAGGAAAGGCCACTCGACAACCACTGTACTTTTAAGGATAAAAGACGACATCATCAAAGCCATGAAAAGGGGAGAGATTACACTTATGGTCCTTGCCGACTTTTCAAAAGCATTTGACACCATCAAATATAAAACTGTCCTGAAGAAGCTCGATTATCTTGGGTTTTCAAAATCTTTTCTTAACTGGACCATCGAATACTTAACTGACAGGCGGCATTTTGTCCAAATAGACGATAAAACATCTGACCGCAGTAGAGTTAACTTTGGAGTGCCACAAGGATCGATTATGGGACCTCTAATATTCAACCTCTACGTCGCAGATCTTCATGCCCACGTTAACATGCAATGTCACCAATACGCGGATAATACAACATTGTATGTGCACTGCAAGCCATCAAACCTCGAAAGTTGTAAACGTGACTTAAGCAAAAACTTATGTAATCTTGAGGAGTGGTCTAGAAATGCAAATTTAGTAATTAATCCATCAAAAACCAAAATGATGGTCTTGTCTACAAAACAATTGTCATCTGCCCGTGCCTTGGAAGACTTAAATATGAAGATCGCAGTAAATAACGAGAACATTGAACGTGTTCCTAGTACTAAACTCTTGGGAACGTACATTAATCAACATCTGAAATGGGAAGACAATGTTAAGTACATTTGTACCTCTTGCTACGCCACACTAGCAATGCTTCGGAAGGTCAAAAATCTGCTGCCTTTTCATATTAGGAAGAACCTTGCCCAAGCACTTGTTCTATCTAAATTATATTATAATGACATTCTTTATCACTCGCTACCGGAATATTTAACAGCACGTCTTCATAGAGTACAAAAGGCAACTGCAAGCTTTGTCAATGTAACTCAGGGATACTCGGAAAACGAGACATGTGGCAATCGAAAGCCGGGGCCTATGATTCAAACAAGGAATGCCACTTGCTTTGCGCGCGCTATAGAAGCACACGCATTCGCTTACCGTTTACATCACAATGATTTTCATAGTAACAGTAGGCATAAACAGTTTTGTTACGAGACTCCAAAACCGTTTTCACACGATTGTGTTACACTGAAAAAGGAACTGTGTTATATTCATAAAAGCAATATGTCGAGCGACAGAGAAACGTATCAAGATGGCAAGAAAAAAGAAGTTCTAACTGATGAGTTCTTTTTTGCGCTTTCCAACGCAATCAACTCTGGAAAATTTTGGCGTTGTATCAGATGGTGCGACGGAGGAAGTACGGTGTTAATCACAAGTCCAGTACTTTTTGAAAGAGATGTTCTGCAGAGGGAGCAATCGAAATTGCAACTGAAGGTGAATGATTTTGCTAGTTTTACTGATTTGCTCAAGCAAGTGGGTTTTGAAAAGGTTCTGAGTCAAAGGCCGTCCAAGGTGCAAAAATTTCGGCATCGCGACTTCACGAAAAACTACAGAGGTTTCCAACATGTGGTTAAGGAGACAGCTGAACCAAATGGAAAGAGAAAATTGTCAACGGAAGAAATTCTTGAGCTCGGTACAACAGGTTCAGTGAAGGCCGAAAAGAATCAAGAAGCAAATCTGGCGCAGTTAGTAAAGCGGCAAAGAAAAGTGACTTTTGAGGATGAAAGCGCGAGGATGGCTAAGAAGAGAAAGAGAAACTGTACAAATGGCGAAGAAATGTCTACGCACGGCAAGAAAAGAAAGATCGCTGTCCCAGTCATCCCGAGTGCTTCAATCACGCACGATACATTCAGCAAACAAATGCGCAGAATCTACAGCGCAGAAGAAATGACCGCTGCCCAGGCATTGCTCAGTTTATCAACACCAGTTGTGTTTGCGAATTACACGGCTATGGAACTAATGGCAGCTCAAAGCCTGGTTACTTTGTCAAGATCTTGTATTGTATCGCAGGAAAGAAGTGTTCGAGAATTGGAGGCGGCGTACGCCTTATTGGAACTTGCCAGCTCAGCCTGA

Transcript

ANN00557-RA

Protein

Uniprot

Uniprot term	Description
Q95SX7	Probable RNA-directed DNA polymerase from transposon BS OS=Drosophila melanogaster OX=7227 GN=RTase PE=2 SV=1
Q9NBX4	Probable RNA-directed DNA polymerase from transposon X-element OS=Drosophila melanogaster OX=7227 GN=X-elementORF2 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00447	HSF_DNA-bind	HSF-type DNA-binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR000232	Domain	Heat shock factor (HSF)-type, DNA-binding	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33332	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan