Gene detail

Detailed information of ANN00808-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:14630678...14637335
NR annotation: XP_029186412.1, sugar transporter SWEET1-like isoform X1 [Acropora millepora]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D3ZH22	Sugar transporter SWEET1 OS=Rattus norvegicus OX=10116 GN=Slc50a1 PE=1 SV=1
Q9CXK4	Sugar transporter SWEET1 OS=Mus musculus OX=10090 GN=Slc50a1 PE=2 SV=1
P0DKJ5	Bidirectional sugar transporter SWEET15 OS=Vitis vinifera OX=29760 GN=SWEET15 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002260 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03083 all species →	MtN3_slv	Sugar efflux transporter for intercellular exchange	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004316 all species →	Repeat	Sugar transporter SWEET repeat	Interproscan
IPR047664 all species →	Family	Sugar transporter SWEET	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10791 all species →	RAG1-ACTIVATING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0008643 all species →	Biological Process	carbohydrate transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0051119 all species →	Molecular Function	sugar transmembrane transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15382	SLC50A, SWEET; solute carrier family 50 (sugar transporter)	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.