Gene detail

Detailed information of ANN01038-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:19347793...19349814
NR annotation: PFX14536.1, Uncharacterized protein K02A2.6 [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN01038-RA

ATGAGTTTCGAAGAAGAGTTCCCTCAGGAACAGCTGTCAGATGAAGATGAGTTGTATGTGGTTTATGATGTTAATGCTATGTCAAGATCTGAAATTTGTGTGCCACTGAAGATTGAAAACAATGATTGTAGTATGCAGTTGGACACTGGGTGTGCACTGTCCCTTGCCCTGATTACTTTTGTGAAACAAGTTTGCCCCAATGTTGAAATGAAACCCTCAACTGTTGTACTTTCAACCTATACTGGTGAAACTGTGCGCCCCTTGGGAGAAGCGCATGTGAGTGTCGAGTGCATGGGATCACAGCATACACTGCCTTTGCTGGTTGTACGTGAGGGTACTACTGCTTTATTTGGTCGGAACTGGCTTTCAGATGTCAAACTGGATTGGAAGAATTTGCCTAGTTTGAATCACATTGGACCTTTGCCATGTAGTTCCGCTGCAAATCCTGTTCCCCCAGGAAACCAGACGTTGGAATCAGTCCTGGAACAATACAGTGAATTATTTCAGCCCCAACTTGGATGTTACACTGGGGATCCAGTTGTGCTCAGGTCCACTAATGTGACCAGTCAGATGATTAAGATGATTAAGAACGAGACTCAGGTGGATCCAGTTCTGTCTCAAGTGTACAATTATGTCATTAGTGGCTGGCCGTGTGTAGTGGATCCCACCCTGGTACCATTTAAGACAAGGCAAGACGAATTAAGCACCCAGCAAGGTTGCATATTATGGGGTGCTCGAGTTATTGTTCCTCCTTCACTCCAAGAGAACGTGTTGCAAGAACTGCATGACACTCACCCCGGAATATCTCGAATGAAAGCGTTGGCCAGATCTTATGTGTGGTGGCCCAACATTGATTCTCACATTGAAAGAACTGTTTCTTCGTGTAGCACGTGCCAGTCTATGAGATCCAATCCTCCTACTGTTCAGATTCATCCCTGGACTTACCCAGCACGACCGTGGTCTCGTATTCATGTAGATTTTGCTGGGCCAGTCTCTGGATGTACTTACCTTGTTGTTGTAGATGCTTACAGCAAATTCCCAGAGGTAGTAAAAATGACTAATACGTCAGCTAGAGCAACTGTCACCGCATTGCGGGACATCTTCAGCAGGCACGGTCTTCAAGAAATTATCGTGTCCGACAATGGGCCACAATTTACAGCTACAGAATTTCAACGATTTTGTTCCAACAATGGAATTTTGCACGTACTTCAGCAGCGTACAAGCCATCCACAAATGGTCAAGCTGAACGTGTTGTGCAGTAAACAAGCCCACGTTACTAATGCTGACGTAGCTGCTGTCATTGCCAAATATTTATTGGTTTACCGAAACACGCCACATTCCACAACAGGTGAACCACCTTCGATGCTTCTTATGGGCCGGAGACTCTGCACCCGCCTGGATTTGCTGACACCTTCAGTTGAAAAACACGTTGAGGCTCGCCAATACAGTACAATGCTAAGTCGCACCACTCATAGAGGCCTTCGCCAGTTCAATGCCGGTGATACTGTCCTGGCTCGTAATTATGGAAGGGGAGAGAAATGGGTGCATGGAGTAATTGCTGAGGTCCTTGGTTCTCGTCATTACATTGTCAAGGTGGCCGGTAATTTGTGGAAACGACACGTGGACCAACTGTTGAGACGTCTTCAAGATACTGCCCCTGTGTGTCGCCCTCCAGTGTTTGAACAGTGGTCTGTGCCACTTGATGTGCCTGCTAATATGGACCAGCCTTGCGAGATGGTTCCTGATTCAACTATTCCGTTTGTTGCTGTGTCTCCTACAGTAACACTGGATGAGTCCCCTTTGGTTGTCACTCAGGAAGATTCTCACCTTGCAAACACGTTACCAACAGTGTCAAAGCCAACTAGTTCACTGCCCGAGATTTCTGATTCTGTTACTGCTGATGAAAGCTTGTTAGTTCGCCTGGGATCTTCGTGTGAAAAACCTGTTAACACTGAAAAACGTTATCCTACCAGGACAACTCATAGGCTCCCTAGCTATTTGAAAGATTACGAGTTAAAGTGA

Transcript

ANN01038-RA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan