Gene detail

Detailed information of ANN01131-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:20827119...20833716
NR annotation: XP_015759472.1, PREDICTED: uncharacterized protein LOC107338752 [Acropora digitifera]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN01131-RA

ATGGCCAGAGCCGCAAACCGACTACGACAGCAGCTTCGACCCGAAGACCCGACCGACCTGGAGTTCGAGATCTCGGAAGAAAACATCCCCACCGGGTTCCTTAAGGCCGACATTTGCAGCCATAGCAAGCGCCACTTGGTGTTCGCAACCAATCAGCAACTCGAGCAGCTTGTCCAAGCAAAAAATTGGTACGTAGATGGCAACTTCAAACTCTGTCGCCAGCCCTTCAGCCAGCTGTTTACCATCAACGCCTTTGTGAGGAGCGGCGAGCAGGCGAAACAGGTCTCTCTTCTGTTTGTCGTGATGTCCGGAGAAAGAAAACGGGACTACCGTGCTGTTTTACGAGAAGTGTTGAGTCTACTTCCCTCGCCACCACCGGTCAGAAAGATAACGTTGGACTTCGAGCGTGCTCTCTGGACAGTATTCAGGGAGTTGCTGCCAGACGTTTCCCTCCAAGGGTGTTTATTCCATTGGACCCAAGCGTTGTGGAGAAAGATCACTCAAGGAAGTCTGCTCGATAAGCACTTGGAATCTGTGACACATAAGAAGAAAGTCAGCAACAGTGATGGAAAGCAGCAAACCCTGAAAACGGCATTTCAGTGCAAAACGAAGCCACAAGCTGAGAAGGTGAAACTATGTGAGGAGTGGATTCAAGCCTGCACGTCAGCAAATGTACCACTTCACAAGTCCGATAGCCCGATCATGAGACAATTTTTAGACACCCGGGTGGTAAACGGGGGAGCTATTCCAAAGGCTTCACAACTTCGGGACTATTATCTTTTTGATGTGTATCAAGTTGAAAAAAGCGAGTTGAAAAAAAAGATCGAAGGCAAACCTGTAGCACTGATGGTGGATGAGTTGAGTGATGATGAGGGGAGGTACGTACTTGACATAATGGTTGTCATTCTTGATTTTGATGAGTTGACTCCTTCTGGGAACACTGTGGCTTATTTATTAGATACGCATTTCTTAAGTGCAACTAATAACAAAACGGTATCTCAAGCGGTCGTAAAAACGGTGAATGACTTCAACATTGAGTTTGATAACGTGCGTGTATTCAATTCCGACAACGTTGGATACATGAAGAAGGCATTCAATGACACACTGTCGTGTCTGTTTCCTCTGTGTGTGCACATTACCTGTAATAGTCATGTGGTTAACCTGGTTGCTTCTGACTTCAAGAAAGGCTTTAAAGAGGTCAACGAATTTGTGAAGTGTTTTAGGAATTTGTTCTTTATTCCAAGCGGCAGAAAAAGCAGATTTCTTGCGTTCTTGCGGAATGCTCTTGGCCGTGAGGAGGGAGTCAAAATGCCACCAAACCCAAACACAAAAAGTTGGGGGGCATGGTTCGAGTCCGTTCTTTACCATGCAGAACACTACCTACTTTTTAATGACTTTATAAAAGAGGAACTTGATCGAGGCAGGAATGTTGCATGCAACTTTCTTCTTCGCCTGGACGAAATGTACAGGGATGAGATCTTTATGAAGAAGCTTGGTGCGCAACTGGAATTTTTGACAGAGAAGTCACCAACCCTTAAAATTTACATTGACTTTTTTCAACAGAAGGTGCCACACATAACGGAGGTTCACAACAAGATGGAAAGTCTCATGTACTATCTCGAGCAAAACACTCACTTGTCGGAAGACGATCTTGCTTTTTGTTTTCAAAGCAACATCTTCAGTTGTGAGGAGAGGGAGGAACTTGTTCCTTTTGCTAATTCAGCCTTCACTTCTGCCCATGAGAAACTACGAAAGTATGTGGTGGCAAGTGCTCAGCCAGCCTTAGAGTTTCTAAGGCAGGTACGTTTACTTGATCCAAGAAATCTCGTCTTGGCAGACCGCACCATTGATGCAAACGATAGCATTCCTGGATTTGATGCAGTGTCAAGAAACGAATGGGATCTGTATGTAAACCATCTTGGTCCTGAAGCTATCAAAGGCAGCACAGATGGCAACCTAGATCTTGTTCTTTTTTGGAAGTCATGTGCAAGCGACCTTCCCGAGCTCTACAAGATAGCCTCGTGCTATTGCACCGCTACAGCAGGCTCTTACGATGTAGAACGGGCATTTTCTGCATATGATGATATTCTTGATGACAAGCGACAATCCCTAAATCAAAGCACAATCAAAGCATTCCACTTTTTAAATTGGAATCTCCGGGTCCAGTTTTCAGATGAAAAGAAAAAGGATCAACCATCAGCCACAGTGCCCCTCTTGAATAAGCGAATGCCCCAAAGCACCGTAAAACAAACTGCCGAGAAACAGGAACCAAACAGCACTCCAAAGTCACATGTACCAAAGAAAGAAATGAAACAATCCCAGTACACTGAAGACATGGGAAAACCAAAGACACGTGTACCAAAGGAAGAAATGAAACAAGCCCATCACACTGAAAGCATGGGAAAACCAAAGACACATGTACCAAAAGAAGAAATGAAACAAGCTCAGCACACTGAAAGCATGGGAAAACCAAATGACCAAAAAAGGGGAACAAAAAGAAAAATGTCAGATTCCGCCGTTAAAACGAAGAAACCGAAAGAAATGAGCGGGAAGTCTACTGTAGCATCTATTAGTAGATTTTGTTTTAGCGGAAGGTCAGCCAGTACTTCCAGTACTTTGTCTGCAACGTGCACAGTGGACTATGGACTAAGCCATGACATAGTAACTGTATTTGCGAGAGAAGATATCTGCGTCTTTCCTCTGTACAAAGAGCCTCTCGTACAATTTTTGCTTGATGACATGACCAGGTTTAAAGGAAGCAACTTAACAGATAAGGAGGACCTACAAGGTCTTATCGGCGGTAATACGACTGATAAGGAGAATTACCTTAATAACTTCATTATTGACGAGTACTTGAAACTCCTTGCAGCTGAAGCTTCTGCACAGGGTTTGAAAGCTGAGACAATTGGATGGTCTGAAACCAGATAA

Transcript

ANN01131-RA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000721 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10551 all species →	MULE	MULE transposase domain	Domain	Interproscan
PF05699 all species →	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018289 all species →	Domain	MULE transposase domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR033375 all species →	Family	CGG triplet repeat-binding protein 1	Interproscan
IPR008906 all species →	Domain	HAT, C-terminal dimerisation domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32344 all species →	U1-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN01131-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.