Gene detail

Detailed information of ANN01286-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:22493744...22502249
NR annotation: CAH3191186.1, unnamed protein product, partial [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q90WJ8	Lactose-binding lectin l-2 OS=Anguilla japonica OX=7937 GN=l-2 PE=1 SV=2
P35248	Pulmonary surfactant-associated protein D OS=Rattus norvegicus OX=10116 GN=Sftpd PE=1 SV=1
P50404	Pulmonary surfactant-associated protein D OS=Mus musculus OX=10090 GN=Sftpd PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF01477	PLAT	PLAT/LH2 domain	Domain	Interproscan
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001304	Domain	C-type lectin-like	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR001024	Domain	PLAT/LH2 domain	Interproscan
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR050685	Family	Low-density lipoprotein receptor	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR036392	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan
IPR018378	Conserved_site	C-type lectin, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24270	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan