Gene detail

Detailed information of ANN01470-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:26812993...26841221
NR annotation: CAH3042433.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN01470-RA

ATGTCTAAGGACATTTCCAAAAAAATTGCTGATGGACTAAGATCACATCGGTCAAGAAGTTTGTTTGTACCAAGGACCACGAACAATGATGACGGCGGCTTTTCAAGCTTAAGTCCATCGACTATCCCAAGATGGAGATCACACGAAACGCTGGATAACAAAATGAAAACAACAACTAAAAACGAAGCGACACCAACGGAGCATGATAGCGTTGACTTGTCGATCAGTGGTCACGTGACAGTTCGCCCTATCCATCCTAGCATTCTTTCGAGGCAGCACTGTTTCCAAGTAACCACTCCTCATGAGACCAAGTATTTCTCGTGTCGAAGTTCTCAGGAGCTGGAAAAATGGGTCGTGAGCATCAAGAAATCGATTCAGCCGACAAGAGATGTTCAGTACAGGACAGACATCGGCTTAACAGTGTGGATTGTGGAGGCTAAGGGCCTCACAGACAAACCAAAAAGACGGTTTTACTGTGAGCTGTTTTTCGACAAAGTCATCTACGCTAAAACGTCTTCCAAGACCAAGTCCGATATTTTATTTTGGGGAGAAAATTTTGCCTTCAATGATTTGCCTGAAGTAAAGACCGTTACGATACAAATTTACAAGGAAGTCGATGGCAAAAACAAGAAAGAGAAAAGGAAGCCTGTCGGCACCGTGGATGTACCAGTTGACTCGTTGGAAATCGGGGTTGAGGTGGAAAAATGGTATCCTGTTACCATGGAGAGCAACAAAACAAACGGAGGAGAGGCACCGAGCATAAGACTTCGCTTTAAATATCAGAAAGTCTCCATTCTCCCGGTCAAGTGTTATAATGAACTGCTGGAGTTTTTAAAACGCAACTACATGACAATTTGTCAAGCCTTGGAACCAGTGGTCAGCGTCAAGCTTAAGGACGAGATTTCTCGAGTGCTGTTAAGAATCCTACAGGCCAATGGAAAGGCAACGGAGTTTCTTGCAAGCATCGTACTGGAAGAAGTTAAAAATCTTGAAGATGAAAACCTTGTATTTCGTGGCAATTCCTTTGCGACGAAAGCTATGGACTCTTACATGAAAATGATCGGGGAATCGTATTTACAAGAGACACTTGGAGACTTTGTTCAGTCAATTTACGAATTTGAGGATGATTGCGAGGTCGACCCATCCAAAAAGACATCCGGGAATATCGAGTCCAATAAAGAGAACCTAAAAACGTTTGTCGAGAAGGTCTGGAACCTAATCATGTGCTCATCCTGCTTCTTTCCAAGTGGTTCCATCTTCTTGCGGTTTTTGTGCCCCGCCATTTTATCTCCAAGCTTATTTCACCTTGTACAAGAATATCCAGACGAGAAAACGTCAAGAGCTCTAACACTGATTGCCAAGGTGATGCAGAATTTGGCCAACTTTACAAGGTTTGGTGGAAAAGAAGAATATATGGGTTTCATGAACGGATTTGTTGAAAAAGAGTTCGTCAACATGAGAAGATTCATCGATGACATATCGCAACAGTCAAGATCTGACACTTCTGAAAACCAGTATGAAGGAATCATCGATAGCGGACGGGAACTTGCTCTTATGTACAACATCTTAAAAGATCAGACCGGCAAGATGAACCAGGATGCTCTCGAAGCCCTCCGCCCGCTGCAATTTATTCTCAAGTCACTACAAGAGATTTACCTCGACTCTGAAAAGAAGTTTGCTCTTGGAAATGAAAGCCTGGTGGCGCACCGAAAATGGGCGTCTTCGTCAGACCTAGTTACTGATCAAGACAAGAACAACATCACTCTCACGCCTGTATCTCAAATCAGGATCATGAAATCGCCCAGAAAGGCGCACAATACGTCAGATGATAGTTCCTTGGACAGGAATCTCGTTTATAACGGTAGCACACCGACCTCGACTCCACCCGAACGTTTAACAGTGTCTCGCTATGATAAATCGATTCTGTCGCCTATTTCCGATGTTGATCCTCCTGGTTCGTCGCCCAGGAAACGAGTACCTTATAACGACGATTTACAAAGTAGCCTTCGTCGGCGGTCGTACAGAAGGGCGATTAATTCCGATGATACTAGCGATCAGAGTACAATTGAACGTGACCGAAGCTCGTCCGAAAAACGATCGACAACGGCCAAATCTTCGGATTCACGTCGTCGTTCACGCTCTGAGGGGCCTCTGATCATATCCAGTGTGGATGGTGGGAGTCCAAGTGATAGTCGTGTGATTTACCAGGGAGATAGCTCAAATAAAAGACTATCCAGGACACTTCCTGACACACGCCAACGATACAGCCACGAAGGAAGAAGACCTTCGCCCGGTAACAAATCTTCTGTGATAACAGATCAGTCTCGGACGTCTTCTCCCGACAGGCGCTCACCATCCAGGGCATCTTCACCAAAACCATCGCCGCATGGAACAGGCGACTCACTCAGAAGGTCATCAGGTGAGAAAGAAGCTTATTCTTCGTCGTCCTCGCCTCGTTCTTCTCCCAGATCATCACACACAAGCGGGAGCTCAACTAAGTTCCTGAACCCAGGTCACGTAGCTCGCAGTCCCTCCCGGACCAGTAGCAGCTCTAGTGGAAGTGACGAGAGTTGGCATAGTGTGGCGAGTAGCGTGGAAGGAGGGTGCAGAAGAAGGGTGAGGAAGATGCCACGGACACCCAATTCGGAGGATACAACGCTTGGCAGCGAGACAGTTTGGGAGCGAATGGCTCCAAGAGCACAGCCCGAAGACTTTGCCAATGGCTACGACTTTATTCCACCCAAAACGGCTGCCGAGTACGAGAAAGAGCTAACTGACCTGCGAGAAGAGCTGCTGGAGACAAAGAGAACCTTGGCCTCGACTCACGAACAGTTGATTTTACAAGAGTCCAGCACACACAAACTGGTAGCTTCCTTCAAGGAAAGGCTAGCGGAAAGCGAGAATTCTCTTCAGCAACTGCGAGACGAGAAAGACAAGGAAATGAAGGAACTGCTAGATCGGCTGGTGAGCGTGGAATCGGAACTGCGCAAGGAACAGAAAGAGATGCAAGAAGTAATTCAAGCCAAACAGGTGATCATCGAGGCTCAGGAGAGAAGGATTAATAGCTTCTATGTTTTAAGCCCATTTCAATTTGCTAATGGCATAGCTAATGGCATAGCTGACAGTGAGGAGATACCTTTAGTGAATGGCCACCTTCCCTGCTAA

Transcript

ANN01470-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3UHC7	Disabled homolog 2-interacting protein OS=Mus musculus OX=10090 GN=Dab2ip PE=1 SV=1
Q5VWQ8	Disabled homolog 2-interacting protein OS=Homo sapiens OX=9606 GN=DAB2IP PE=1 SV=2
Q9UJF2	Ras GTPase-activating protein nGAP OS=Homo sapiens OX=9606 GN=RASAL2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002585 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF00616 all species →	RasGAP	GTPase-activator protein for Ras-like GTPase	Family	Interproscan
PF12004 all species →	DAB2P_C	Disabled homolog 2-interacting protein, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR001936 all species →	Domain	Ras GTPase-activating domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR039360 all species →	Family	Ras GTPase-activating protein	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR023152 all species →	Conserved_site	Ras GTPase-activating protein, conserved site	Interproscan
IPR021887 all species →	Domain	Disabled homolog 2-interacting protein, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10194 all species →	RAS GTPASE-ACTIVATING PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043087 all species →	Biological Process	regulation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN01470-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.