Gene detail

Detailed information of ANN01557-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:28456385...28468149
NR annotation: CAH3044643.1, unnamed protein product, partial [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN01557-RA

ATGGCACGCTTTAAGGCAGCTTTTCTGTTTCTTCTTTTTGCCGCATGGATTGTCGGCCTTGATGCTAGTGGTACGTGTGCTTACGAATGTTCCAGCTACACAGTCCTTGATGACCAAAACAGAGCGCAGAACTATTCCGCTGTTACAAATTTATGTGATACGCCGGAAATATCAGTTGGCTGGTACAGATTCAGCGGAGCTGCTGGAAACCAAATGCCTCAAGTTTGTGTCCCGCCCAAACGTTGCGGTACAAATATACCGGGTTGGCTTAACGGCAATCATCCTTTAGTTGCTGATGGTGTTGTTAACAGGCAGGTGTGTTTTAGCTTTCCCGGTATCTGCTGTTTCTTTCCAATCAACATCGCTGTCCGCAACTGCACAGGTTTCTACGTCTACAGACTTCAACCACCATTGTTTGGATGCTTATATCGCTTTTGTGGCAATGGGGTACCAGACAGCATTGACTGCTACCCAAGCCTGTGCGCAAATGGTGGAACATGTGTTGATGTGATCAATGACTACAGGTGCATCTGTAATATATTCCCTGTGTTAAGAACGGAATATCTGTCATCCGCCGGAAATATTGAAAAACTTAATATAACATTTTACCACCCTAGCACAATCGATGTCTTCCGAGCAGACATTCTACTAAAACAGTTTAAACTCAAGAGGTGTTCCCCTTTAATAGCATTCTTATTCCTTTTAGATATTGACGATTGCCAGCCGAATCCTTGTAGAAACGGTGGATTCTGCGTTGATGGGATCAACAACTTCATATGCAACTGTGCCCCGGGTTTTCAAGGATACAACTGTTCAGAGTTGGTGGTTTCTTCTGCGGCCATTGCTGCATCTCTGGAGACGTCTTTAAAGCGTCATTTACATTTTATGACTGGAAGAAAGAAAAGTGCTTTGCAGAGTAATAAAGGGTTAGAAAAAGAAACTAAGTGGCTGTTATTGACACATAAAAGAAAGGGAACTGGCGTGACTGTAACTTGTGATGAGAGTAGCATGTCGGTAGACTTGGAGAAGGAGGTATATCCGTACTTAAATGCAAGCTTACTTCACTTGCGTTCTTCTTCGTGCGGAGCTACAGAAAGTGCAACGCACCTGTCTTTGACTACTGATTTGGATGATTGCCTGACGTCAGTCGCAGAAACTTCCAGCTCGCTAATTTTTATGAATGAGATTCAAGCAGATATTGTGCATATATCTAGTGCTGTCACCCGAGACCACGATTTTGATCTGGTGTTCAACTGTAGCTATCCCAAAGAGAAGTTTCTCAGCTTGAGGTTCACACCAGACGGAATAGACATCCCTCCATTGCAAGTGGGATTCGGTAACCTCACCTTCAAGATGGACTTCTACACAAATTCTTCCTTTGCAACACCGTATAATGACATTGACTACCCTCTGACGATCCCTCTCAATGATTACATATACATACAATACAGCGTGGAGTCCAGAGCTAGTTTGGCGGTAATAGCTGTGAATTGTAAGGCCACCAAAGACGATAGTTTCTCTTCTTCGCCTTCCTACTCCTTCATCGTCTCTGGATACGAAGTAGATTCCACAATGTGGTACTCGTACTCTCCAACCCGAAGTTATCAACAACTTAAGATCAAGGCATTCAGGTTCTTCACAGACTATGATACGGTTTACTTCCATTGTGAGCTGATGGCCTGTCACACCACACTTCCTTCCAGGTGTACCACTGGTTGTCCTTCGAGAAAGAGGAGAGGTGTAACGACAAGTGACGAAACAAGTGAACAGAGCACAACCAAGTCATACTTCCTCAAACGAGGGCCGATAGTGCTCAAAGAAAAAGGAGGAACGAAAGATACCGGGAATACTGACCAGCAAGTCATTGTGATTGCGAGTGCGACAGCTGCTGGTGGAGTTGGTCTGGTTGCTGTAATAGTGCTTGCTGTTTTGTTTGTAAAATACCGCATTGCAAGACTGCTGCTTAATCGCAACAAGGACACTACTGAGGACGAACATGCCAACCGCCGAATCATTTACATTCAAGAGGATGATATGGACGAATCACTGCGAGATAATGTTTACAAGTGTTAG

Transcript

ANN01557-RA

Protein

Uniprot

Uniprot term	Description
P25291	Pancreatic secretory granule membrane major glycoprotein GP2 OS=Canis lupus familiaris OX=9615 GN=GP2 PE=1 SV=1
P16293	Coagulation factor IX (Fragment) OS=Sus scrofa OX=9823 GN=F9 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00100	Zona_pellucida	Zona pellucida-like domain	Family	Interproscan
PF12661	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF00008	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR001507	Domain	Zona pellucida domain	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR042235	Homologous_superfamily	Zona pellucida, ZP-C domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR013032	Conserved_site	EGF-like, conserved site	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14002	ENDOGLIN/TGF-BETA RECEPTOR TYPE III	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03440	ASICN; acid-sensing ion channel, other	-	Ion channels	ko04040	deepkoala