Gene detail

Detailed information of ANN01578-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:28846894...28862746
NR annotation: PFX32631.1, PiggyBac transposable element-derived protein 1 [Stylophora pistillata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN01578-RA

ATGGCATCAACGGAGGAGGCGGTGAAAAATGAAAATTCGTCCACTCAATCGAGCAACACGTCGGAATCTTCGAAACCTTCACAGCCTTCTGCCACAAATCCAGTTAATAACACAGCGTCCTCCAAGAAGCCAAACTATATTCTCAAGTACACATTGACTGGTCATACAAAAGCGATTTCATCTGTGAAGTTTAGTCCCAATGGAGATTGGCTGGCAAGCTCTTCTGCTGACAAGTACATAAAAATATGGGGAGCTTATGATGGAAAGTTTGAGAAAACCATATCTGGCCACAAACTGGGTATATCAGACGTGTCATGGTCTTCAGATTCAAAGCTGCTTGTTTCTGCTTCAGATGATAAAACTCTAAAAATCTGGGATTTTGCCACTGGAAAGTGTCTCAAGACTCTCAAAGGACACAGCAACTACGTATTCTGCTGTAACTTCAATCCTCAGTCTAACCTGATCGTATCAGGCTCGTTTGATGAAAGTGTGCGCATTTGGGATGTGAAGACTGGAAAGTGCTTGAAGACATTACCTGCTCATTCAGATCCTGTCACAGCGGTTCATTTCAATAGAGACGGTGCTTTGATTGTATCAAGTAGTTATGATGGCCTTTGTCGAATTTGGGATACTGCTTCAGGGCAATGCCTCAAGACTCTAATAGATGATGATAATCCACCAGTTTCTTTTGTGAAGTTTTCTCCCAATGGAAAGTATATATTAGCAGCAACGTTAGACAATATGTCGGCAAGGGAAGGAAGGTTTAATGCCGAACAAGCTCTAGAAAGGATTTGGAGTAATTCTGGTGACGAGGAAGATTTCGAGATCGATGAAAGCGAAATTGAATCGTATGGTACGGCGAGTGAAGATGAAAGTGACGAGGCTAGTGTTGATGTCTCTTCATCGAGCGAAGAAAACATTGCTCTTGATTCTGATGAAAGCAGTGATGATGAAGCTTCCGATGGCGGGGATGGTGGGAATCGAATGAATCGTGCAAGGCAAAGAACCGTAAGACAACAACAAGCTCCGCTTGTCTGGCGAATGGCGCGTGGGACAGCATCGCGTGACATTCCCTTCACAGGAAATTCCGGTGTACAAGTACTGTACAGACAGCAGGCAGAAACTAATCGCTATGCAGACGAGTTTATAGCTGAGGGCAATCTTAGAAGAAGATCACGAGCAAATGACTGGTCCCCAACAGACAGGAAAGAAATGAAACAATTTCTGGGTTTGTTTTTTTTGATGGGGATTATTCACAAGCCGGCTATTTACATGTATTGGTCCAAGGACCCTTTGTTCTGTACCCCCATTTTCAGCGCTGTTATGAGTAGAAATCGTTTCCAGCTGCTTCTGAAATTTCTTCATTTCAATGACAACTCTCAGATGCCTGAACCTAATGATCCATCTCCTGATAAACTGTTCAAGCTACGACCTTTATTGGATCACCTCTTTGAGAAGTTTCAGGAAGTCTATGTACCAACCTGTAACGTTTCAATTGATGAGTCCCTGTTATTGTGGAAGGGCAGATTAAGTTTCAAGCAATACATCCCCCTAAAGAGAGCTAGATTTGGTGTGAAATCATTTATGTTGTGTGAAGATAGTGGTTACACATTTTCTTTCAAGATTTACACGGGCAAGGAAAACGTAGCCCCCACAGCACAAGAGCTTTCTCTTTCGGAGAGAGTTGTTGTCGACCTCATGCAACCGCTGCTGCATAAAGGTTATCATTTGTACACTGATACCTGGTATACGAGCTTACCGCTGTACAAGTACCTTCATCGCCATGGAACTTTAGCTTGTGGGACAATCCGAAGTAACAGAAAGGGGTTTCCGGAGCAAGTGAAGAACGCAAATTTGAGGAGAGATGAGCAAATAGCTTGTCGCGCTGATGAGCTATTGGCAGTAAAATTCAAAGATAAAAAGGATGTGTACATGCTTAGTACCATCCATGATGATTCAATGGTGCACCGGCCAGACAGGAGACACCGAAATCAGCGCCATACAAAGCCAACCTGTATTGCAGATTACAACAAGTACATGGGTGGGGTTGACCGCACTGATCAGCTGCTTAAACCCTACGAGGTACCTCGCAAAACCCTGAAGTGGTATAAGAAGGTGGCCATCCACTTTATCCAGCTTTCAATGCTCAACAGCTTTATTGTGTACCAAAAAGATGGGGGTCGAAAACCATTCCTGGGTTTCCAACGTGAGGTAATTGCAGCCCTTCTGTTTGAAAATGGAAATGGTGCCAACATGGAGATCCCCAGAGAGGAGAACATCATAAGGCTTACTGAGCGTCACTTTTTTGCACCGGTTCCAGAAACAGCCACTAAGCAAAAGCCTCAGAAGAGATGCAGAGTGTGCTACAAGAAGGGAGTGCGTAAGGACAGTCGCTACCATTGTCCGACCTGTCCGAGCAATCCAGGACTTTGTTATTTTTCCTGTTTTGAACTTTACCACACCAACACCCTGAAACTATGGGACTACAGCAAAGGAAAATGTCTGAAAACTTACACTGGCCACAAGAATGAAAAATACTGCATATTTGCCAACTTCTCAGTCACGGGAGGCAAGTGGATAGTGTCAGGATCAGAAGACAATATGGTGTATATTTGGAACCTTCAGTCCAAAGAAGTGGTACAAACACTTGAGGGCCACAGTGATGTGGTCCTTTGTTCTGCGTGCCATCCAACAGAAAATATCATAGCGTCCGGAGCTCTGGAAAACGACAAAACTATAAAGATATGGAAATCGGATTCATAG

Transcript

ANN01578-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96DM1	PiggyBac transposable element-derived protein 4 OS=Homo sapiens OX=9606 GN=PGBD4 PE=1 SV=3
Q5M786	WD repeat-containing protein 5 OS=Xenopus tropicalis OX=8364 GN=wdr5 PE=2 SV=1
Q86VZ2	WD repeat-containing protein 5B OS=Homo sapiens OX=9606 GN=WDR5B PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000046 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13842 all species →	Tnp_zf-ribbon_2	DDE_Tnp_1-like zinc-ribbon	Domain	Interproscan
PF13843 all species →	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032718 all species →	Domain	PiggyBac transposable element-derived protein 4, C-terminal zinc-ribbon	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR029526 all species →	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46599 all species →	PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05236	COPA, RET1; coatomer subunit alpha	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.