Gene detail

Detailed information of ANN01894-RA in Nanomia septata

Genomic Location: chr1:127897609...127904446
NR annotation: DAC81738.1, TPA_asm: integrase [Stylophora coral adintovirus]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN01894-RA

ATGTATAATTATTCGATTAACAACTTTTCGTCTTGTCAATTCGAGCAAACAATTGAAGAACAAATATATGGAGTGCAGCAGAATAAGCAATATTGTTCCAGGTTTTCTTCAGACAATCCGTCATGTCAGTGGAATGGGTATAACGTCAGTAACACGTTTCCTTATTGGGAAAATGGACTTAGTTATTCGTCAAAACGAGCGAGAGACTTGAAATTGAAGTACGTGAGCGACAAACTTGCAAGAGAAAGACAATTACGACGAAATGCACGCGAAAGAGCTCGTCAAAACAGATTGAACGATGCATTTGATGTTTTAAGAAACTCATTACCCGGTTATTTAGCTCCAAACAAAAAACAAGTCAAGATACCGAATAAAAACCTATTATCCAGACTAAAGAGAAACATTAAAGTgactcggacagcgtcgccggtatccggacaCAATTTGATTTCGCCAAAACACAATGatgcatggcgtactataaaaacaggcctcttcactgtacataaaaaactAGTTCAGTGTCTTCCGagcaagtttatattatcaaattatgtatttataattaattttcaaacaaaatggttgactcttcctggaattatgagatacacaaaagcttcacgtgtaaacaaaatttttaaatatatcttggttgtattagacatattctcaaggtttgcatggacaagaccacttaaaaataagggaggtatatgtgtaaagaatactctccgtgatataatggaatcatCTGGAAGAAAACcgtttaaaattcagtcagacaatggtacagaattttacaattcgaatgtcggaggattattgaaacaatataacatcaagctttattctacacacaatgaaccgaaagcaagaattgccgagagatttatacgaactttacgtgtaaAGATTGAATTGAATTTCATCGTttcacaaacgacagtatggtatgatattttacctgaactcttacgcgaatacaaccattcctatcatcgtagtataggtatgccacccgaagatgctataaaaccagaaaactatacaaaggtctttaaccgactttattcaaaacagagagaagacacgcaaccgacATTGAACATTAGTGATAAAgtgcgaattagtattcataaaagattatTTGAAAAgagagctactgccaactggtcagaagagatatttGTAAAGCTTACAGATTATTATTTCTTAGATTTAGCCGGCGAAGAAGTTAAAGGATCATTTTATAGAGAACAAatgcaaaagactgaccaaaatatctacagaattgatcacattatccgtcgacgtggtgatgaagttcttgtcaactggtctggccaCGCAGATAAATtaaattcttggatacctaaagatgATGATACTCTAAAGCAGCTTCACCAGTTGGAGCAACTTGAAGTaaatggagtaattggagcaaacggagtaactccggaACCTTTACCAGACGACtatccacctgaaaaaccacacaaacatacacgatatcaagaggaatgtgaagaagagtcgtcagaatttGAACAGTCAATAAAAAATAGTGATGatacttggcatgataatggatcaataaacagaaaacactctattTGGTTACCTCGCAGTGTCCgcgcaattatcgttggaaagtctggatttggtaagactacacttttaacatccttgcTATTTGAGCCTGACCTGTTggactatgaaaaaataatggtatgtgggaaaagtctccatcaacctgaatatagagccatggaactcggttttgacagcggattgtcaaagaatcaagtgcgacggctgtttagatatcaagaacatgtcatgaagtatggaggtatagaacaagtgattaaagactattctggagactGTAAAGGTGCCATTcttgatccaatcgagcatgactcgtcgagtcgaaacttgctagttctagatgtcatgttgagtcccaaaaacaaagtagaagcttattttataAGGGGACGACacaataatgttgacgtcatttacatcacacaatcatattttcaatTACTGAGTACATGA

Transcript

ANN01894-RA

ATGTATAATTATTCGATTAACAACTTTTCGTCTTGTCAATTCGAGCAAACAATTGAAGAACAAATATATGGAGTGCAGCAGAATAAGCAATATTGTTCCAGGTTTTCTTCAGACAATCCGTCATGTCAGTGGAATGGGTATAACGTCAGTAACACGTTTCCTTATTGGGAAAATGGACTTAGTTATTCGTCAAAACGAGCGAGAGACTTGAAATTGAAGTACGTGAGCGACAAACTTGCAAGAGAAAGACAATTACGACGAAATGCACGCGAAAGAGCTCGTCAAAACAGATTGAACGATGCATTTGATGTTTTAAGAAACTCATTACCCGGTTATTTAGCTCCAAACAAAAAACAAGTCAAGATACCGAATAAAAACCTATTATCCAGACTAAAGAGAAACATTAAAGTGACTCGGACAGCGTCGCCGGTATCCGGACACAATTTGATTTCGCCAAAACACAATGATGCATGGCGTACTATAAAAACAGGCCTCTTCACTGTACATAAAAAACTAGTTCAGTGTCTTCCGAGCAAGTTTATATTATCAAATTATGTATTTATAATTAATTTTCAAACAAAATGGTTGACTCTTCCTGGAATTATGAGATACACAAAAGCTTCACGTGTAAACAAAATTTTTAAATATATCTTGGTTGTATTAGACATATTCTCAAGGTTTGCATGGACAAGACCACTTAAAAATAAGGGAGGTATATGTGTAAAGAATACTCTCCGTGATATAATGGAATCATCTGGAAGAAAACCGTTTAAAATTCAGTCAGACAATGGTACAGAATTTTACAATTCGAATGTCGGAGGATTATTGAAACAATATAACATCAAGCTTTATTCTACACACAATGAACCGAAAGCAAGAATTGCCGAGAGATTTATACGAACTTTACGTGTAAAGATTGAATTGAATTTCATCGTTTCACAAACGACAGTATGGTATGATATTTTACCTGAACTCTTACGCGAATACAACCATTCCTATCATCGTAGTATAGGTATGCCACCCGAAGATGCTATAAAACCAGAAAACTATACAAAGGTCTTTAACCGACTTTATTCAAAACAGAGAGAAGACACGCAACCGACATTGAACATTAGTGATAAAGTGCGAATTAGTATTCATAAAAGATTATTTGAAAAGAGAGCTACTGCCAACTGGTCAGAAGAGATATTTGTAAAGCTTACAGATTATTATTTCTTAGATTTAGCCGGCGAAGAAGTTAAAGGATCATTTTATAGAGAACAAATGCAAAAGACTGACCAAAATATCTACAGAATTGATCACATTATCCGTCGACGTGGTGATGAAGTTCTTGTCAACTGGTCTGGCCACGCAGATAAATTAAATTCTTGGATACCTAAAGATGATGATACTCTAAAGCAGCTTCACCAGTTGGAGCAACTTGAAGTAAATGGAGTAATTGGAGCAAACGGAGTAACTCCGGAACCTTTACCAGACGACTATCCACCTGAAAAACCACACAAACATACACGATATCAAGAGGAATGTGAAGAAGAGTCGTCAGAATTTGAACAGTCAATAAAAAATAGTGATGATACTTGGCATGATAATGGATCAATAAACAGAAAACACTCTATTTGGTTACCTCGCAGTGTCCGCGCAATTATCGTTGGAAAGTCTGGATTTGGTAAGACTACACTTTTAACATCCTTGCTATTTGAGCCTGACCTGTTGGACTATGAAAAAATAATGGTATGTGGGAAAAGTCTCCATCAACCTGAATATAGAGCCATGGAACTCGGTTTTGACAGCGGATTGTCAAAGAATCAAGTGCGACGGCTGTTTAGATATCAAGAACATGTCATGAAGTATGGAGGTATAGAACAAGTGATTAAAGACTATTCTGGAGACTGTAAAGGTGCCATTCTTGATCCAATCGAGCATGACTCGTCGAGTCGAAACTTGCTAGTTCTAGATGTCATGTTGAGTCCCAAAAACAAAGTAGAAGCTTATTTTATAAGGGGACGACACAATAATGTTGACGTCATTTACATCACACAATCATATTTTCAATTACTGAGTACATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR011598	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46585	INTEGRASE CORE DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan