Gene detail

Detailed information of ANN01928-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:35702637...35718740
NR annotation: CAH3023502.1, unnamed protein product [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN01928-RA

ATGACAACAGAAACACAAGACTTGGTCGTGAGTGTAACACCTCGAAACAGAGCGAACTTTCGAAGGCTTAAAACCAACAGCATCCAAAGTTTTAAGCGATGGGAAAAAGAGAACGAACTTCTCTATGCTATGATGGAGGACGAAAGCGAGTGGCTGGCCAAATTATTTCCCGATGTGGTCATTTCTCCGGAGTTTTTCTTCTATGCGCTAGAAGATGGCTCTTTGCTTTGCCGACTTGCGAACTACATCCAAGAGAGAGCAGAGCTGTACTCGCAAAAGAACAATGTTCAGGTGCCTGGAAAGAAATTTCGCTATCACACAATGAGCAAGTGCGGCAGAGAAATCAAACTCTTTCGTTCCAGGGAAAATGTGCAGCAGTTTCTGATGTGGTGTCGGAGTCACGGTTTGCAAGAAGCTATTTTGTTTGAATCGAACGATGTTGTACAAGTCGATGATTATAGAGAGGGATGCAGAGGTGTTATCATATGCCTCATGGAGATAGTTAGACGGACAGCGAAGTTTGATCTTGATGAGCTACCACAGCTAATACAGATGGAGAAAGAAATCGAAGAGGAGGAGTCTCGTAGCGACACGGAACTTTCGAACGGGCAAGGGCAAGTTTTACATGTCGAGGAAATAAACATGACGGAAAATGACAGCCTTGAAGTGCAAACAGATCAGCCAGAAGTCCAAAGCCCGAGTTCACTGGACTCCGATTCTGGAGTGGACTCGGTTTTCGATCAAGACGAGGGAGAAAATGCTGCTTCTCGCCTCACCGAGTTTTCACACGAGGAAACCGAGAAAACAGAGAAGACCACCAAAACTGTCACAGTACGAAAACAAAAATTGCCTGAGCCAAAAGATCAGAAAAGTTCATCAAAGAAGGGCAAAGAACTTCCTTCTCTTCTGGAAAGCACAGGGCCCAAATCAGAATTGGACAAACAAGTGTGCAAGATTGCCCAGAACTACAATATAAAACTTGTCCACCGTCTAAAGGAAGGAAAGTACATCATTCTTGGCCGAGTTATGTTTGTTAGGATGTTGAATGAGCATATGCTGGTCCGGATAGGAGGAGGATGGGATACGCTTGAGCATTACCTCATGACTCATGCTCCCTCTAAAGAAGGTATGAAGACTAAAATGATAGACAATAACACAATACTCTTGTGTGTTAAAACTGCCCTTGAAACCCCAAGTACGCCGAGTTCTCAAGCTGTCACAAGCCCACGGAACTCCATATCTGCGGGCAGTGGTGTCAGAAGCAGCCTGATCGAAAAGATTAAAAGGAAAGAGCAAGTGGGAGCTATAAACAGAGACTCGGCGGTTTATTCCTCACAAGGAAGCTTAAACCAGCAATTAGGCGCAACATCTTCGGTAAAGCCCCGAGAAAGAGGAAAGAGGGACTCCCTGAACGATAGCGACGAGAAGGACATTACCAACGCTATCCGAAAAATCTCCTCATCAGTTTCGCAGACTCTAGGAGAAAGACCTGTCAGTTTTACTAATAAAACGTTTCATCAGCTTAAGAGTCGTTTTGACAAGGGAATATTTGGCTCAGCTCGACGGACGTCATCACCAGATCTTACAGTAAAAGGCAACAAAAGTCGAAGGCGTTTGAGTGATACTCTTACAATGGCCGATGTCGTTACAACTCTTGCTTTTGACGGACAGCAAACATCTATTGGAAATAACAATGATACTGAATCGAGACAATCAGAGTCTGGAGAAGAGTCGGGTGTAGGAAAAGTCGCGGCACCGACTGGAGACTTACTCGGTACCGAAAGTTTGCAGAGAGAGCTTATACCGTCCGAGCTCACTATTTTCAACGAGCCAGAAGGTTCTGTTCCTGTTGTCGGAGAAATACTCTACGTGGATAGTTCAGATGAATCTTATTTGAATGAAGATTCATTTGGTGGTCAAGTCAACGGAAGTGCGAATCTCGTCGATGTGTCGTCGTTTGATCCCTTCGCAGCCGCCCCTGAGCATGGTGAACTGATATCGATTGGTACGACATCTTCTGATAAACCCAATGAACAGCCGGCGAGCACTGATGTTGTCGATAGTGGTGTTGTCGATAGTGGTGCATTAGCTCACGAAGAGCAGCCTCCCGAGGTAGCATCCGAAACAGCGGTGGAATCTTCACCTGCTGTAGATCTGGGAGATTTAATGCAAGACACAGAACCTTGCAGTACAGTCGAGGCTTCACCGCGGCCAATCGACCTAGGAGATTTACTGCTAGACTCAGAAACCAAGACGGATGAAGGAGGTGCAGTGGACGTTTCAACCGCTGCTGCCCTGGAGGAGGAGGTTGCTCCAGGTGAACCGGGACAGGAAGCAATACCCGCCGATGTTGAACAAGTTAATCCCGATGAATCCGTTTTAAACGAGGACGTGCCAACAAGCGTCCAAGACGTTCCCCCAGTCTTAGTAGATTTTGCACCCGACAGTGTCGTAGAAACCGAATCGGAACCACCAAAGCTTGAAGAAGAGTGTGGTGGAGTCGAAGCGTCAACTGCCGGTAAAGAAACTGTCGAAGAACCGTTGAAAGTGGAAGAAGAACCACCCGAACCGACAGAAATGGAAGGAGAATCCGCTAAAATAGAAGAGCCAACTCATAGCGGAGAAACGCTTGTGGAAATGGAGTCAGAACCGCTTAAAATGCAAGACGAACCTGTCGAGGAACCGCCCAAAGCGGAAGAAGAACCATCCCGAGAAGAATCTATCGTGGAAATGGAACCGGAACCGCCAAAAGTGGAAGTAAAATCTGGTGAAATAGAAGAGCCCACTCACAGCGAAGAAACTGTCGTGGAAGTGGAGCCTGAACCGCATAGAATGGAAGACGAACCTGTCACAGTCGAGGAGCGGGTTCCGAGCGAAGTTGCTGTTGTGGAACCACCAACCGAACAGGAACCTGCTGCGAAGGTCGAAGAGTCATCCGCCAATGAGGAAACAGTGACAAAATCGGAAGGAGCAAGCACAGAAGTGGGTCCAGAATTAGACGAAACTACCACGCAACAAGAAAGGCAAAATCAAGCAGCTGATGTTCAAGTGACTGAAGCGGAGGAAGCGTCAGTAAAGGAAGACGAGGATAAGGAAGGAGATAAGCCTGTAGAGACTCCAGCTGCAGAGAAGCCAGCTGAGAAGGCTACAAAGTCAAAGTCTGCTGTCGCTAGTACAAGACCCAAGTCTCCTCCTAAAGCAGGCTCTACAGCAAAGCAAGCCTCAGCTAAAAAGCCCCCAGGAGCCGCACGGCCGACTTCAGCTGCGAAGTCTGCCACCAGTGCGCCGGCTAAAAAAGACGTTAAAGCGCCCGCTACCAAAGCGCCAGCTCCAAAGACAGCTGCCTCCAAAGTGTCAGCCACTAAAACACCAGCCTCGGCAGCCGCAGGTGCTAAAAGGCCTGCAGCTAAACCTGCAACAACGAAGACAAATGAAGCAAAGAAACCAGAAAAGCCCAAGAGTGCTGCAGCAACTCGTCCTTCATCGAAAACCACTGACACCAAAACTCCCGGTGCAACTCGACCGGCTAGTTCGACTGCGAAAAAAGTTCCGCCTTCCGCTACTAAAACAGCTGCTGCTAAGGCTCCTGGTAAAGACGCGAAAGATGCTGGTGCACCAAAAAGCGCGCCAAAGACAGCCGCGACGAGGCCTCAATCTGCAAGACCAACAGCCCCGAAAACCACAACTACGAAAGCGAATGCCTCTGCAGCAAAACCGACTTCTGCTAAACCTACCCGCCCTCAAAGCGCAAAGCCAGCTGACAGCACAGATGGTACGCCTCTTGCAAAGAAACCAACGGCGCGGCCCCAGAGTGCGAAAACAAAGCCAACGACCACGACAACGACCGTAAAAAAGACAACCACAACCACTACTACGAGCAAGTTGGGTGCCGGCCATGCAAAATCTCAGACAACCACCACGAAAACGGTGACGCAGGCAAAGACCGGTCAGCCAAAGACTACCACAACTACTACAACTACAACGAAAACATCTGCTAAACCATCAGCACCGAGAACTACCTCGGCTGCTGCTAAAAAGCCTGCAGCGACTGGAGCAAAATCGAAAACTGGCGTGGGAGCCGCTGGTGGTAAACCAGCCGCGAAATCTGCGCCAAAGAAAAAGGCAGAAGAACCGGCTAGAGAAAAAGAGGTAGAACAAGAAGAAAAACCACCAGAGCCCGCAACTGACAAAAACCCGACGGAAGTTGTTGAAACTACAACCGAAGTTGTCGAAACGGTTGTAGAGCCGCCTGGTGAAGTGAGCCCCGAAGACAGATCGATTGAATTAGCACCCGATTCCGCTCCAGCCGAACAAGCTTCGGAGCCTGTCGAGGGCCCTGTGGAAGAAATCGTTGAGCAGTCGAGTGTCATTACGCGTGTCGTCACTAGCGAGACAACAACGGTCGTAAAAGATGGCGAAGAACAGTCAAGCACTACAGTAGAAGAAACTACATTTGAACAGTCTGTAGGAGAAAGTTGA

Transcript

ANN01928-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9W3Y4	GAS2-like protein pickled eggs OS=Drosophila melanogaster OX=7227 GN=pigs PE=2 SV=2
O43903	Growth arrest-specific protein 2 OS=Homo sapiens OX=9606 GN=GAS2 PE=1 SV=1
P11862	Growth arrest-specific protein 2 OS=Mus musculus OX=10090 GN=Gas2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001140 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02187 all species →	GAS2	Growth-Arrest-Specific Protein 2 Domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003108 all species →	Domain	GAR domain	Interproscan
IPR036534 all species →	Homologous_superfamily	GAR domain superfamily	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46756 all species →	TRANSGELIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0001578 all species →	Biological Process	microtubule bundle formation	Interproscan
GO:0001725 all species →	Cellular Component	stress fiber	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005884 all species →	Cellular Component	actin filament	Interproscan
GO:0008093 all species →	Molecular Function	cytoskeletal anchor activity	Interproscan
GO:0031110 all species →	Biological Process	regulation of microtubule polymerization or depolymerization	Interproscan
GO:0035371 all species →	Cellular Component	microtubule plus-end	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0051764 all species →	Biological Process	actin crosslink formation	Interproscan
GO:1904825 all species →	Biological Process	protein localization to microtubule plus-end	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN01928-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.