Gene detail

Detailed information of ANN02001-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:37301754...37318083
NR annotation: CAH3041315.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN02001-RA

ATGAGTCTAATTAGTTTTTTTGAGGAAGGCTGGACCACGAAAACAAAAGCAACTACTGCAGTGTCCTTTTCCCACAAGGTTTGCGGCCGGGCTGTGAAAGCCTTTATTTCTCACGTTTGGGAAGTTTGTCTGTCTGTGTACGGAAGACGAGTAAGAAGGAAAGAAGACGACGATGAACACTGGGTGGATTGTAATATTGACGTTTGTCATTCTGTACACGGAAGACGAGTAAAGAGGAAAGAAGACGACGATGAACACAGGGTGGATAGTAATATTGACGAGATGATTGTTCTTGGCCATTGGAAGCTAGATGGCAGTGATCAGGACATAAGTTTCAGTGGTAATCCATTCTTTATCGAAGGGTGGTGTCCAGGAAGCAAGGCTCCCACCTTCAACAAATCAAATTCCTTCGCCACTGCTCCGATAGTCTATCTCAATCGCAGGAACTTTTCCATTTCCTGTTGGATAAAACCAATGTGGAACTTTGGTTTCCAAACGTTTTATAACGACTGGACGTATCCATGGCAGTTTCACTTTAGTCTTATAGGCCGGAGGGTCGCATTTAGTCGCCATAGCACCGGTAGCTCCGAGTGGTACTACATTCAGAGTGACGTTGAAGTTTCTTCGAACATTTGGACACACGTGGCAGTCACGTGGGATTACCCAACAGCAACTCCGACAATTTATATTGATGGTAAAGACGTAACTTACAGTAGGTATCCCCCTGGGGAGATGTCCTTCTACGAACCGACGGGAAAGCCATACAAAATTGGAAATGACGGCCACTCGCACGATCACCAATTCTACGGATCAGTTATGGATCTTTACGTTTTTGGCACGGCATTATCACAAGATCAAATCAACAAAGTAAGAGGTGCACCTGTTATCGTTAACAAGAGCAAGGAAATTACAGGTGGAACCGTTCTAGTCAAATGGGATCCTCCCATAGAAGGGATATGTCCTGTTGTGCAGTACAACGTCAACTACAGAGAAGAAGAAGGCCACTGGAACTCAACTACTGTCAGTGGAAACACCACCAGCTATACCCTTCATCTGAAGTGTCGGAAACAGTATAATATAACTGTCACCTCCTTTTATTCATACAACGAAAGTGATAAGGAGGAGAGCAAGATATGGAGCTTTAAAACTGGATTTAAAGGTAAAGGTTTGTGCTTAACCCAGATTTCCGTCACACTAAGAGGTGCACCTTTTATCGTAAACAAGAGCAAGGAAGTTACAGGTGGAACCGTTCTAGTCAAATGGGAGCCTCCCATATGTCCTGTTGTGCAGTACAACGTCAATTACAGAGAAGACAAAGGCCACTGGAACTCAACCACTGTCAGTGGAAACACCACCAGCTATACCCTTCACCTGGAGTGTTGGAAACAGTATGAAATAACTGTCACCTCCTTTTATTCATACAACGAAAGTGACAAGGAAGACAGCAAGATATGGAACTTCGAAACTGGAACTAAAGATACACCATTACCCCCTACAATAACAAACAGCGAAACTGAAACAGTGGGCTGTGATGTCAACGTTACTTGGATGAAGCCTGTTGATAACGGATGTCCGCTGACTATGTACTCGGTGTACTATCGAGAGATACAGTCACATGAAACACGAGCGTCCTGGCAGGAAGTTAGAATCAATGACAATTTGAAGACACATTATGTTCTTCCATTAAGATGTGATACGCAGTACGTGATCGAAATGTCCGCCTGGAATGAGTTAGGTCAGAGCAGCAGATCAAGAAGGTGGAATATAAAAACAAACTCAGGCAAGTTTCCAAGAATTAAGCATTTGGATCCTTTTGCATGTTTTGTTAGAGTCGAGAGCATGGAGGATGCCCTTTATAGTAACTTCATCCTGGAACTGAAATCCGCATGCAAGATGGCGCTACTCCAGATCTTCTGCCATCTTCTGTCATGCCTCATAGCCAAGTCGAATTTTAATATCTCGGAAATGGTCTATTTGATGGATCAGACGAACGTAATAGACACGAGTTCTCGGACATCTTCAGCCTTGATGGTTGGTTTAATATCGGGGGTCGTTTTTCTTCTTGTGATCACTTTCATCGTGGGGACATCATGGATTCATAAAAAAGTAGTGAAAAAGAAGAAGTTGGCACGTAACTCGGAATCCCGGAGATCGAAGTCAACCATTATACCCCTTCGACGATGGGAGGTTCTACCGGAACAAGTCGAGTTCAATGAGGAGATTGGTCGTGGTGCATTTGGTAAAGTGCTTAAAGGTGTTTTCAGGGAGTCACCTGGAATTGAGGTGTTTTACAAGTCCAGAACTCAGACTGTCGACTTAAAAGAAGGCCGGACAGTAGCTGTTAAAGTGTTAGAAGGTAAACGATTTCAGACATATTAA

Transcript

ANN02001-RA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000061 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13385 all species →	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR050991 all species →	Family	Extracellular Matrix Regulatory Proteins	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46708 all species →	TENASCIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN02001-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.