Detailed information of ANN02062-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:38437435...38444606
NR annotation: XP_020626770.1, exosome complex component RRP4-like [Orbicella faveolata]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8VBV3Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1
Q2KID0Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1
Q13868Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006821 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15985
all species →		KH_6KH domainDomainInterproscan
PF21266
all species →		RRP4_S1RRP4, S1 domainDomainInterproscan
PF14382
all species →		ECR1_NExosome complex exonuclease RRP4 N-terminal regionDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR004088
all species →		DomainK Homology domain, type 1Interproscan
IPR026699
all species →		FamilyExosome complex RNA-binding protein 1/RRP40/RRP4Interproscan
IPR036612
all species →		Homologous_superfamilyK Homology domain, type 1 superfamilyInterproscan
IPR048565
all species →		DomainRRP4, S1 domainInterproscan
IPR012340
all species →		Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR025721
all species →		DomainExosome complex component, N-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21321
all species →		PNAS-3 RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0000176
all species →		Cellular Componentnuclear exosome (RNase complex)Interproscan
GO:0000177
all species →		Cellular Componentcytoplasmic exosome (RNase complex)Interproscan
GO:0000178
all species →		Cellular Componentexosome (RNase complex)Interproscan
GO:0000467
all species →		Biological Processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0034427
all species →		Biological Processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'Interproscan
GO:0034475
all species →		Biological ProcessU4 snRNA 3'-end processingInterproscan
GO:0043928
all species →		Biological Processobsolete exonucleolytic catabolism of deadenylated mRNAInterproscan
GO:0071034
all species →		Biological ProcessCUT catabolic processInterproscan
GO:0071035
all species →		Biological Processnuclear polyadenylation-dependent rRNA catabolic processInterproscan
GO:0071038
all species →		Biological ProcessTRAMP-dependent tRNA surveillance pathwayInterproscan
GO:0071051
all species →		Biological Processpoly(A)-dependent snoRNA 3'-end processingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K03679RRP4, EXOSC2; exosome complex component RRP4-Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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