Gene detail

Detailed information of ANN02071-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:38567642...38597499
NR annotation: CAH3041808.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN02071-RA

ATGATGATAATACTACATAAGCCAGAAAAGGTTAAGGGTTTACGTCTCCTTAGTTCCAGGTGTACGTTTTTGTTTCAGAAACTTATCCAGTCCATGTCAGCTAAAGAAGTCGAGTTACAGAGATTAAACAATGGTAAAGAACTGCTGGAACAACGCCTGGATGAAATGCTGAAACAAAAAGAACGAGAACAAGTTGAGCTATTGGAAAAGCATAGAGCATTGTCTCGGGATCACTCTTCCAAGATCGATGCCCTTGAGGAAGCTTATCAGCAAGTGTCTGCAAATGCTCAAGAACAGTTGGAGGCGAAGGACAGAATAATACAGAAGCTAGCGGCGAGCAGCAAAGAGAAGGATAACTTACTTGCGGACTTCTTGCAGGCTTTGAGGGAGGCTTGTGATGACTCAGAGACGAAGAACCCGTCTGATACTGAAGAGAACCTTGTGAAGAAATTAACAAACTACATGAAAGAAAAGGACCGTGCTTTACAGGTTGCAGCTGAGGATAAATTGCGGGCTTTACAAGGCAAGGAGGCGGAACTTCAGCAGCTGAGGCAATCGCTGAGAGAACGGGACAGACTGATCGAGAAAATGAACTCTGCGGTCCTGGAAGCGAATGAAAAGAACAAACTTTTAGAGAACACGAGCAGAGAAAAGCACGAAGCTTTGCATAAAACATCAGCCTCTCTGAAGGATCAGCTGAAAGGACAAAAGGAAGAGCTAAAGACAAAAGACGCAAGTTTACAGGAGAAGGAAATCGTGATTCAAAAGCTGAAACACAATTTGAACAACAGCGAAGGAGAAGTGAAGGTGAACAACATCGTAGAGAAATGTCTGTCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCAACATCAGTTATTTGCCTTTATAAATTAAAAGACTTCGTGAAGAATGCTCTGAGCAACCCGATAGAGGACGAGGGGACATCCGATGAAGCTAGAAAAGCTCAGGAAATATCAGACTTGCTGAAGGAGAAGGAAAAACTTTTGGAGGATATGTTCCAAGAACGTTCCAGAATGTCAGCTACTCATGAAGCTAACAGTCAGAGACTGATGTCAGCTCTTAAAGACAAAGAGAGTGCCTTGCAGGAGGCTACAAATGACATGACGCGAGTTCAAACAGAGAAGAACGCGAGCATCCAGAGACTTCAGCAACTGCTGAACAGCAAGGAACACGAAGTGCAGGCGCTGGAAAACAGCAAGGCTTGGGCCACGCAAGAGCACGATATGTTAGTGGACAAACTTAAGTTGGCCTTACATGACAAGGACAGAACTATCGAAGGTTTAGTGGAAAGCGGGAAGCAAAAAGATAAGATATTGAAAGCATTACAGGAGTCCACTAGAAGCCCATCAAAGGCCCCCAGCCCGGCTGAAGTGGCGGAGCTTAAACGAAACATCGGTTTACTGCAAGCTGAAGTGCAAAAGAAAGACGAATCGTTAAAGAGGCTCGAATCCGACTACAGGAACAACTTGAGGAAACTGCAAGGCGACGATCGAGAGAACAAGATGAAATTTGAGAATCTTCAACATGAAATACAAACAAGAGATGCGTTTATTAAACAAGCACAGGCCACCAATGAGAATCTTCGTTCAAGGCTACAGAACGTGCCCAAGTTGGAGGAACTTAAGCAGAAATTCGTGGAGCAGTCACAGGCCTTGGCTGAAGCTCAGAAGGGTAAAGAACAAGCGCTTGTGGACTCGGCTGCGCTTAAGAAATCAAACTTGGAACTAGAGGCAGAGCTAAAGGTGAAACTGAACAACATTGAAATGCTGAGCGAGGGGGCACAGATGAAGGACAAGATTATTAAGGAGATGCAGGACGACCAACAGAAGCAACTTAAAGACATGAAAGAGAACATTGGGTATTATCAGAAAAAAGCTCAGGAACTTGAGGGCTCGAATAATTTGCTAAAACAGCAACTAATGGAGACGGAAGACCTGAAAAATTCACTTGAGCAACAACTGGAGAGCTACAAGAAAAGGCTAAGTAAACAGGCTTCGCAAGGGGAAGAAGAAGTCAACTTGCTTCGCCAAGAAGTGAACAATCTGAAGGCCAGGCTGCAGAGGGCTGGGTCACCACGCCGTGAAAGTCCCGGAGTGGGTGCTGGGGCTGAAGACCAGAGACCAGGTGTTCTTCAGCTACAACAGCTACTTGAAGCTCAGATCGCCGAGACAAATCGCCTGAACGATATCCTGGCCACTGAGCGTGCGCTGTACGGCAACCTAGCGCAAGTGGTTCAGGACGCACAGCATGCTGGGGAAGCCAGGCACGACATCAACATTAAAGACGAAATACAGGCGCTCAAATCGCTCCGCGCACAACTTGAAGAAGGAATCCACGAGAATGATTCACTACGGGCTCAACTGCACGAGAATCTGGCCGCCGCTAAAATTCGTAGTCCACTTGCGGCATCTCCCTATGACGCCGCCTATCAGAGAGAGATTCAAGAGCTGAAGTCGAGGCTTGAAGACAGTGAACGCTGGAATGCTTCATTGCAGGCTCGGTTGAACGAATTGCAGCCGCGAGTTAGCGGCGTCGGGCGGGACAGCGCTGATGGAGGGTCCGGTTCATCTCCAAAAGTTCAGAGGCTGCAACAGCAAGTAGAAAAGCTGAAGGAGCAACTCAAACATAGCAGTCAGCTGAACATCAGACTGAAGAATCAACTGGACGAAGTGAATTCTTTAAATATGCAGACAGTGGCGGACAAAGATGACATAATTAGAGAGTTGAGGCAACAAGTGGAAACGCTAAAAACACAACTAGACAACACAACACGAACATTCAGCGAGCTCGAGAGAAGACTGGCAGATGCCAACACGAAACTGGAATTTTACGCTTCCAGTTTAAACGGGAATCTAGACGAGACACTTCTCGAGCGCGAACAAGAATTGGAATTGTTAAAACACGAACTGGATGAGTTACGGCGGCTTCAGAACAATCGCGTGTCTTCCGATACGGGTGCGCAGACGTCTCCGTCGAAGGACTGGGCTCAAGTGTCGAGCGACAAAGTTCGGGAACTGGAACAGAGGTACGAAGAGAGTCGCCAAACGAATGAACAGTACAAGAATATTTTGAACGAGAAGGAGATGGAGCTACAGCGACTTAAACAAAAGGAAGCAGCGAGAACTCAAGAAAATTCCGATGCTAAATTGCGTGAAATGGCAGAAATCCAGAAACTTCGAAGGGAGTACGAATCGGGAATCAAAACAAACGACGAACTTAGAGGACTCTTAGAGAGTGAACGAGATAAAATTCACGACAGATCAAGATCATCGGATGGAATATTAGAGCTACGACTGCAACTCGACGAATCCTTACAGGAGAACGACGAACTTAAACGACAACTCAACGAAAGTGCCCGCCTGGATGACGAAGTTAACCGACTAAGACACGAACTTCTAAACGCTACTCAGGTGAATGATTCGCTTGGGTCACGATTAAAAGAAATGAAAGAATCTTCTTCAAGAATGAAGGAAGTGAGGGCGGAGGCCGTGAAGCTACAGAAAGAGTTACAAGACGAAAGGCGTTTGAATAAGACACTGACTGATCAACTGAAGGAGACGAGAAAATCGGCGGAGGAAATTGGAAGAGTGCAGCGAGAGTTGAGAGAAGCGAAGATGATGAATGAGCAACTCGGCAAACAACTCGCTGAGCTTCTCAATCATTCGGCAAAAATGAAAAATGAGATCGAAAAATTACAACACGAACTTCAAGAAAAAGATAAAGTTATCGAGACATTAGAGCTCAGACTTCAGTCCAAAGCAGAAATGCATTCCGTTGCACTCTCGCCATTTTCTAGTCCTTCAACGGTCAGACGCTATGGACAGACACAGACCAGCCCTGGTTTACATGCGAGGAGCCCGCTTAACTTATCAACAGCCGCATCATCACAAAACGAGTCTTCCTCGGAAGCGATAGAGAAGCTTCACCAGATGAACAGAATGCTTTTGGGTGAAAACCAGCTTTTGAGGAGCAAACTGAAAGATAGCGAAAAACTCAACGACACTCTAAGGAACGAAAACAATATGATTTCGAAACTGCACAGCCAGTCCACTCAAGCACAAGCTACGAGCGACAAGCAAGCTTCCATGGATGACCTATTGGCTGCATTCATGGCAGAAATGAGAGAACTGCGCCTGCGTTTAGAGGATAGTATTCGCACCAATGACGCACTGCGGGCTCAGTTGGAAAAGCGATTGTTGTCTGAAGGTGATAGTGAGGGAGCTGCTGTCAGTGGGCCTGACAGGATTATTCTGATTCGAGAGAATGACACGTTACGAACTGAGCTGCTGGAGAAAGATCGGATTAATGAAAAGTTGAAGAGGGTGATTGATGGACTGAAACAAGAACAAACTAGAGACAAAGATCAAGTCAATTTTCTTCGTCAGCAGCTCGTGGAGAGCGCTAAAGTGTCAGAAAATCTCAAAAAGGAACTGAGCGTTTACGAGAAACTATATAAACTGTCTGTTGAAGGCAGGAACAGTGAAGGACAAGCGGAGGGCCAAAGTTACGGTAGTGAAGGTCCACGGAGTCCCAACAGTGAGCTACAGCGAGACGCTATGTCACTTTTGTTGGCTGAAATCCGCAGTTTGCGAGTGCAGCTCGAGAAAAGCATACAAACTAACAATGCTCTGCGGCTCAAGCTTGAGGAACAGCTCGGGCGACCTCTCTCTTCACCGTCCCAGTCCCCAAGCAGATCTCAAGTCACGGTCATCCGCCAACTCGACTTCTCAGAGGGGAGGAGTGGGGACGATGCTGCTTCCGTGAGCTCTGCAAGAGATATCGAAAATGGAAGAATATCCGGTGAGGATCAAGAGATTGTCGATCAGCTTGAAGGAAAATTAAACGCAATCAACAAATCCGCCACTGATGCGTACAACAGCATCATATCAAACGCTCAGACCGACAGCCTGCCCCATATTGAGAATATTTTAAGAATTGTGTTGGGATGCAAAGCGCTGTTGAACGATCTTCGAGTGGATCTTTCTGCTCGGCGTACATCCGGGAATTCCGACAATGATAGAGAGAGTAAAACTCTCAAGCTTGAGATTGCAAAATTGAGACGTCGACTTCTTGTCCAAGAAGATATGATTAAACAAGCTTGTGAAAGGCTTGAGGTAGGTGGTTTGTTTTGTTTTCAACTCATTTTGAGCCGTGTGGAGAGCTCAAAAACACCATAA

Transcript

ANN02071-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96SN8	CDK5 regulatory subunit-associated protein 2 OS=Homo sapiens OX=9606 GN=CDK5RAP2 PE=1 SV=5
Q19UN5	CDK5 regulatory subunit-associated protein 2 OS=Pan troglodytes OX=9598 GN=CDK5RAP2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001978 (this species only)

Pfam domain

No Pfam domain signature was detected for ANN02071-RA. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR052593 all species →	Family	Microtubule-associated AKAP9-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46501 all species →	MYOMEGALIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0007098 all species →	Biological Process	centrosome cycle	Interproscan
GO:0060090 all species →	Molecular Function	molecular adaptor activity	Interproscan
GO:0090063 all species →	Biological Process	positive regulation of microtubule nucleation	Interproscan
GO:1903358 all species →	Biological Process	regulation of Golgi organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16542	CDK5RAP2; CDK5 regulatory subunit-associated protein 2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.